mia_processes.pipelines package

The package containing the various pipelines available in mia_processes.

Subpackages

• mia_processes.pipelines.CerebVascularReact package
  • Submodules
  • mia_processes.pipelines.CerebVascularReact.co2_inhalation module
    • CO2_inhalation
      • CO2_inhalation.pipeline_definition()
• mia_processes.pipelines.DWITractography package
  • Submodules
  • mia_processes.pipelines.DWITractography.dwi_whole_brain_tractography module
    • Dwi_whole_brain_tractography
      • Dwi_whole_brain_tractography.pipeline_definition()
• mia_processes.pipelines.preprocess package
  • Submodules
  • mia_processes.pipelines.preprocess.anat_airmask module
    • Anat_airmask
      • Anat_airmask.pipeline_definition()
  • mia_processes.pipelines.preprocess.anat_headmask module
    • Anat_headmask
      • Anat_headmask.pipeline_definition()
  • mia_processes.pipelines.preprocess.anat_mni_tpms module
    • Anat_mni_tpms
      • Anat_mni_tpms.pipeline_definition()
  • mia_processes.pipelines.preprocess.anat_skullstrip module
    • Anat_skullstrip
      • Anat_skullstrip.pipeline_definition()
  • mia_processes.pipelines.preprocess.anat_skullstrip_synthstrip module
    • Anat_skullstrip_synthstrip
      • Anat_skullstrip_synthstrip.pipeline_definition()
  • mia_processes.pipelines.preprocess.anat_spatial_norm module
    • Anat_spatial_norm
      • Anat_spatial_norm.pipeline_definition()
  • mia_processes.pipelines.preprocess.bold_hmc module
    • Bold_hmc
      • Bold_hmc.pipeline_definition()
  • mia_processes.pipelines.preprocess.bold_mni_align module
    • Bold_mni_align
      • Bold_mni_align.pipeline_definition()
  • mia_processes.pipelines.preprocess.bold_spatial_preprocessing1 module
    • Bold_spatial_preprocessing1
      • Bold_spatial_preprocessing1.pipeline_definition()
  • mia_processes.pipelines.preprocess.bold_spatial_preprocessing2 module
    • Bold_spatial_preprocessing2
      • Bold_spatial_preprocessing2.pipeline_definition()
  • mia_processes.pipelines.preprocess.dwi_fod_msmt_csd module
    • Dwi_fod_msmt_csd
      • Dwi_fod_msmt_csd.pipeline_definition()
  • mia_processes.pipelines.preprocess.dwipreprocessing module
    • Dwi_preprocessing
      • Dwi_preprocessing.pipeline_definition()
  • mia_processes.pipelines.preprocess.spatial_mask module
    • Spatial_mask
      • Spatial_mask.pipeline_definition()
• mia_processes.pipelines.qualityControl package
  • Submodules
  • mia_processes.pipelines.qualityControl.anat_mriqc module
    • Anat_mriqc
      • Anat_mriqc.pipeline_definition()
  • mia_processes.pipelines.qualityControl.bold_mriqc module
    • Bold_mriqc
      • Bold_mriqc.pipeline_definition()
• mia_processes.pipelines.reports package
  • Submodules
  • mia_processes.pipelines.reports.bold_iqms module
    • Bold_iqms
      • Bold_iqms.pipeline_definition()
  • mia_processes.pipelines.reports.extract_roi_param module
    • Extract_roi_param
      • Extract_roi_param.pipeline_definition()
• mia_processes.pipelines.stat package
  • Submodules
  • mia_processes.pipelines.stat.bold_stat_cvr module
    • Bold_stat_cvr
      • Bold_stat_cvr.pipeline_definition()