mia_processes.pipelines.qualityControl package

The pipelines dedicated to the quality control measurement.

Submodules

mia_processes.pipelines.qualityControl.anat_mriqc module

The atomic calculations from afni.

class mia_processes.pipelines.qualityControl.anat_mriqc.Anat_mriqc(autoexport_nodes_parameters=None, **kwargs)[source]

Bases: Pipeline

Get no-reference IQMs (image quality metrics) from structural (T1w and T2w) data using mriqc anatomical workflow (mriqc v22.06)

Please, see the complete documentation for the Anat_mriqc_pipeline brick in the mia_processes website

Note

  • Type ‘Anat_mriqc.help()’ for a full description of this process parameters.

  • Type ‘<Anat_mriqc>.get_input_spec()’ for a full description of this process input trait types.

  • Type ‘<Anat_mriqc>.get_output_spec()’ for a full description of this process output trait types.

pipeline_definition()[source]

Building the pipeline

mia_processes.pipelines.qualityControl.bold_mriqc module

The MRIQC pipeline for functional MRI data.

class mia_processes.pipelines.qualityControl.bold_mriqc.Bold_mriqc(autoexport_nodes_parameters=None, **kwargs)[source]

Bases: Pipeline

Get no-reference IQMs (image quality metrics) from functional MRI data using mriqc functional workflow (mriqc v22.06)

Please, see the complete documentation for the Bold_mriqc brick in the mia_processes website

Note

  • Type ‘Bold_mriqc.help()’ for a full description of this process parameters.

  • Type ‘<Bold_mriqc>.get_input_spec()’ for a full description of this process input trait types.

  • Type ‘<Bold_mriqc>.get_output_spec()’ for a full description of this process output trait types.

pipeline_definition()[source]

Building the pipeline