Index

_

__enter__() (populse_mia.data_manager.database_mia.DatabaseMIA method) __exit__() (populse_mia.data_manager.database_mia.DatabaseMIA method) __init__() (populse_mia.data_manager.data_history_inspect.ProtoProcess method) (populse_mia.data_manager.data_loader.ImportProgress method) (populse_mia.data_manager.data_loader.ImportWorker method) (populse_mia.data_manager.database_mia.DatabaseMIA method) (populse_mia.data_manager.database_mia.DatabaseMiaData method) (populse_mia.data_manager.database_mia.DatabaseMiaSchema method) (populse_mia.data_manager.filter.Filter method) (populse_mia.data_manager.project.Project method) (populse_mia.data_manager.project_properties.SavedProjects method) (populse_mia.software_properties.Config method) (populse_mia.tests.run_mia_test.LogCapture method) (populse_mia.user_interface.data_browser.advanced_search.AdvancedSearch method) (populse_mia.user_interface.data_browser.count_table.CountTable method) (populse_mia.user_interface.data_browser.data_browser.DataBrowser method) (populse_mia.user_interface.data_browser.data_browser.DateFormatDelegate method) (populse_mia.user_interface.data_browser.data_browser.DateTimeFormatDelegate method) (populse_mia.user_interface.data_browser.data_browser.NumberFormatDelegate method) (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) (populse_mia.user_interface.data_browser.data_browser.TimeFormatDelegate method) (populse_mia.user_interface.data_browser.mini_viewer.MiniViewer method) (populse_mia.user_interface.data_browser.modify_table.ModifyTable method) (populse_mia.user_interface.data_browser.rapid_search.RapidSearch method) (populse_mia.user_interface.data_viewer.anatomist.mia_anatomist.MiaViewer method) (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.LeftSimple3DControl method) (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.VolRenderControl method) (populse_mia.user_interface.data_viewer.anatomist_2.mia_anatomist.MiaViewer method) (populse_mia.user_interface.data_viewer.anatomist_2.snd_window.NewWindowViewer method) (populse_mia.user_interface.data_viewer.data_viewer_tab.DataViewerTab method) (populse_mia.user_interface.main_window.MainWindow method) (populse_mia.user_interface.pipeline_manager.iteration_table.IterationTable method) (populse_mia.user_interface.pipeline_manager.node_controller.CapsulNodeController method) (populse_mia.user_interface.pipeline_manager.node_controller.FilterWidget method) (populse_mia.user_interface.pipeline_manager.node_controller.NodeController method) (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditor method) (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.RunProgress method) (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.RunWorker method) (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.StatusWidget method) (populse_mia.user_interface.pipeline_manager.plug_filter.PlugFilter method) (populse_mia.user_interface.pipeline_manager.process_library.DictionaryTreeModel method) (populse_mia.user_interface.pipeline_manager.process_library.InstallProcesses method) (populse_mia.user_interface.pipeline_manager.process_library.Node method) (populse_mia.user_interface.pipeline_manager.process_library.PackageLibrary method) (populse_mia.user_interface.pipeline_manager.process_library.PackageLibraryDialog method) (populse_mia.user_interface.pipeline_manager.process_library.ProcessLibrary method) (populse_mia.user_interface.pipeline_manager.process_library.ProcessLibraryWidget method) (populse_mia.user_interface.pipeline_manager.process_mia.MIAProcessCompletionEngine method) (populse_mia.user_interface.pipeline_manager.process_mia.ProcessMIA method) (populse_mia.user_interface.pop_ups.ClickableLabel method) (populse_mia.user_interface.pop_ups.DefaultValueListCreation method) (populse_mia.user_interface.pop_ups.DefaultValueQLineEdit method) (populse_mia.user_interface.pop_ups.PopUpAddPath method) (populse_mia.user_interface.pop_ups.PopUpAddTag method) (populse_mia.user_interface.pop_ups.PopUpCloneTag method) (populse_mia.user_interface.pop_ups.PopUpClosePipeline method) (populse_mia.user_interface.pop_ups.PopUpDataBrowserCurrentSelection method) (populse_mia.user_interface.pop_ups.PopUpDeletedProject method) (populse_mia.user_interface.pop_ups.PopUpDeleteProject method) (populse_mia.user_interface.pop_ups.PopUpFilterSelection method) (populse_mia.user_interface.pop_ups.PopUpInformation method) (populse_mia.user_interface.pop_ups.PopUpInheritanceDict method) (populse_mia.user_interface.pop_ups.PopUpMultipleSort method) (populse_mia.user_interface.pop_ups.PopUpNewProject method) (populse_mia.user_interface.pop_ups.PopUpOpenProject method) (populse_mia.user_interface.pop_ups.PopUpPreferences method) (populse_mia.user_interface.pop_ups.PopUpProperties method) (populse_mia.user_interface.pop_ups.PopUpQuit method) (populse_mia.user_interface.pop_ups.PopUpRemoveScan method) (populse_mia.user_interface.pop_ups.PopUpRemoveTag method) (populse_mia.user_interface.pop_ups.PopUpSaveProjectAs method) (populse_mia.user_interface.pop_ups.PopUpSeeAllProjects method) (populse_mia.user_interface.pop_ups.PopUpSelectFilter method) (populse_mia.user_interface.pop_ups.PopUpSelectIteration method) (populse_mia.user_interface.pop_ups.PopUpSelectTag method) (populse_mia.user_interface.pop_ups.PopUpSelectTagCountTable method) (populse_mia.user_interface.pop_ups.PopUpShowHistory method) (populse_mia.user_interface.pop_ups.PopUpTagSelection method) (populse_mia.user_interface.pop_ups.PopUpVisualizedTags method) (populse_mia.user_interface.pop_ups.QLabel_clickable method) (populse_mia.utils.utils.PackagesInstall method) _add_dialog_buttons() (populse_mia.user_interface.data_viewer.anatomist_2.mia_anatomist.MiaViewer method) _add_field_to_collections() (populse_mia.user_interface.pipeline_manager.process_mia.ProcessMIA method) _add_or_modify_tags() (populse_mia.user_interface.pipeline_manager.process_mia.ProcessMIA method) _add_package() (populse_mia.user_interface.pipeline_manager.process_library.InstallProcesses method) _add_tag_to_database() (populse_mia.data_manager.data_loader.ImportWorker method) _after_run_process() (populse_mia.user_interface.pipeline_manager.process_mia.ProcessMIA method) _all_values_identical() (populse_mia.user_interface.pipeline_manager.process_mia.ProcessMIA method) _already_loaded (populse_mia.utils.utils.PackagesInstall attribute) _apply_default_values() (populse_mia.data_manager.data_loader.ImportWorker method) _apply_preferences() (populse_mia.user_interface.data_viewer.anatomist_2.mia_anatomist.MiaViewer method) _change_pattern_in_folder() (populse_mia.user_interface.pipeline_manager.process_library.InstallProcesses method) _check_interrupt() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.RunWorker method) _class_cleanups (populse_mia.tests.run_mia_test.Test_Z_MIAOthers attribute) (populse_mia.tests.run_mia_test.TestMIACase attribute) (populse_mia.tests.run_mia_test.TestMIADataBrowser attribute) (populse_mia.tests.run_mia_test.TestMIAMainWindow attribute) (populse_mia.tests.run_mia_test.TestMIANodeController attribute) (populse_mia.tests.run_mia_test.TestMIAPipelineEditor attribute) (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab attribute) _classSetupFailed (populse_mia.tests.run_mia_test.Test_Z_MIAOthers attribute) (populse_mia.tests.run_mia_test.TestMIACase attribute) (populse_mia.tests.run_mia_test.TestMIADataBrowser attribute) (populse_mia.tests.run_mia_test.TestMIAMainWindow attribute) (populse_mia.tests.run_mia_test.TestMIANodeController attribute) (populse_mia.tests.run_mia_test.TestMIAPipelineEditor attribute) (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab attribute) _complete_mia_process() (populse_mia.user_interface.pipeline_manager.process_mia.MIAProcessCompletionEngine method) _complete_standard_process() (populse_mia.user_interface.pipeline_manager.process_mia.MIAProcessCompletionEngine method) _configure_matlab_only() (populse_mia.software_properties.Config method) _configure_matlab_spm() (populse_mia.software_properties.Config method)

_configure_mcr_only() (populse_mia.software_properties.Config method) _configure_process_library() (populse_mia.user_interface.pipeline_manager.process_library.ProcessLibraryWidget method) _configure_standalone_spm() (populse_mia.software_properties.Config method) _connect_signals() (populse_mia.user_interface.pop_ups.PopUpAddTag method) (populse_mia.user_interface.pop_ups.PopUpCloneTag method) (populse_mia.user_interface.pop_ups.PopUpClosePipeline method) (populse_mia.user_interface.pop_ups.PopUpDeletedProject method) _convert_datetime_values() (populse_mia.data_manager.data_loader.ImportWorker method) _convert_value() (populse_mia.user_interface.data_browser.modify_table.ModifyTable method) _create_button() (populse_mia.user_interface.pipeline_manager.process_library.PackageLibraryDialog method) (populse_mia.user_interface.pop_ups.PopUpTagSelection method) (populse_mia.user_interface.pop_ups.PopUpVisualizedTags method) _create_button_layout() (populse_mia.user_interface.pop_ups.PopUpVisualizedTags method) _create_clickable_label() (populse_mia.user_interface.data_browser.count_table.CountTable method) _create_install_buttons() (populse_mia.user_interface.pipeline_manager.process_library.PackageLibraryDialog method) _create_label() (populse_mia.user_interface.pop_ups.PopUpVisualizedTags method) _create_layouts() (populse_mia.user_interface.data_browser.mini_viewer.MiniViewer method) _create_left_layout() (populse_mia.user_interface.pop_ups.PopUpVisualizedTags method) _create_line_edit() (populse_mia.user_interface.pipeline_manager.process_library.PackageLibraryDialog method) _create_list_group() (populse_mia.user_interface.pipeline_manager.process_library.PackageLibraryDialog method) _create_list_widget() (populse_mia.user_interface.pipeline_manager.process_library.PackageLibraryDialog method) _create_main_layout() (populse_mia.user_interface.pipeline_manager.process_library.PackageLibraryDialog method) _create_package_management_buttons() (populse_mia.user_interface.pipeline_manager.process_library.PackageLibraryDialog method) _create_preferences_dialog() (populse_mia.user_interface.data_viewer.anatomist_2.mia_anatomist.MiaViewer method) _create_push_button() (populse_mia.user_interface.data_browser.count_table.CountTable method) _create_right_layout() (populse_mia.user_interface.pop_ups.PopUpVisualizedTags method) _create_save_cancel_layout() (populse_mia.user_interface.pipeline_manager.process_library.PackageLibraryDialog method) _create_search_bar() (populse_mia.user_interface.pop_ups.PopUpVisualizedTags method) _create_status_label() (populse_mia.user_interface.pipeline_manager.process_library.PackageLibraryDialog method) _create_tag_button() (populse_mia.user_interface.pipeline_manager.iteration_table.IterationTable method) _create_tag_list() (populse_mia.user_interface.pop_ups.PopUpVisualizedTags method) _create_top_bar() (populse_mia.user_interface.data_browser.mini_viewer.MiniViewer method) _del_link() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditor method) _delete_project() (populse_mia.user_interface.pop_ups.PopUpDeleteProject method) _determine_completion_message() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.RunProgress method) _disable_matlab_spm() (populse_mia.software_properties.Config method) _disable_nipype_copy() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.RunWorker method) _displayVolume() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) _ensure_associated_file_tag_exists() (populse_mia.data_manager.data_loader.ImportWorker method) _export_plug() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditor method) _extract_tag_info() (populse_mia.data_manager.data_loader.ImportWorker method) _find_child() (populse_mia.user_interface.data_viewer.anatomist.mia_anatomist.MiaViewer static method) _find_plug_for_output() (populse_mia.user_interface.pipeline_manager.process_mia.ProcessMIA method) _get_export_logs() (populse_mia.data_manager.data_loader.ImportWorker method) _get_relative_path() (populse_mia.user_interface.pipeline_manager.process_mia.ProcessMIA method) _global_handlers_initialized (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 attribute) _initialize_checkboxes() (populse_mia.user_interface.data_browser.mini_viewer.MiniViewer method) _initialize_components() (populse_mia.user_interface.data_browser.mini_viewer.MiniViewer method) _install_new_package() (populse_mia.user_interface.pipeline_manager.process_library.InstallProcesses method) _is_valid_date() (in module populse_mia.utils.utils) _load_initial_configuration() (populse_mia.user_interface.pipeline_manager.process_library.PackageLibraryDialog method) _load_process_config() (populse_mia.user_interface.pipeline_manager.process_library.InstallProcesses method) _mia_viewers_count (populse_mia.user_interface.data_viewer.anatomist.mia_anatomist.MiaViewer attribute) (populse_mia.user_interface.data_viewer.anatomist_2.mia_anatomist.MiaViewer attribute) _mock_mouse_event() (populse_mia.tests.run_mia_test.Test_Z_MIAOthers method) _populate_tag_list() (populse_mia.user_interface.pop_ups.PopUpCloneTag method) (populse_mia.user_interface.pop_ups.PopUpSelectTag method) _populate_tags() (populse_mia.user_interface.pop_ups.PopUpVisualizedTags method) _process_associated_file() (populse_mia.data_manager.data_loader.ImportWorker method) _process_associated_files() (populse_mia.data_manager.data_loader.ImportWorker method) _process_datetime_format() (populse_mia.data_manager.data_loader.ImportWorker method) _process_file_tags() (populse_mia.data_manager.data_loader.ImportWorker method) _process_fsl_format_files() (populse_mia.data_manager.data_loader.ImportWorker method) _process_list_values() (populse_mia.data_manager.data_loader.ImportWorker method) _process_log_entries() (populse_mia.data_manager.data_loader.ImportWorker method) _process_mrtrix_format_file() (populse_mia.data_manager.data_loader.ImportWorker method) _process_scan_file() (populse_mia.data_manager.data_loader.ImportWorker method) _process_selected_documents() (populse_mia.user_interface.data_viewer.anatomist_2.mia_anatomist.MiaViewer method) _recurse_dict() (populse_mia.user_interface.pipeline_manager.process_library.Node method) _register_node_io_in_database() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) _release_grab_link() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditor method) _remove_plug() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditor method) _remove_tags() (populse_mia.user_interface.pipeline_manager.process_mia.ProcessMIA method) _resolve_inheritance_ambiguity() (populse_mia.user_interface.pipeline_manager.process_mia.ProcessMIA method) _rollback_changes() (populse_mia.user_interface.pipeline_manager.process_library.InstallProcesses method) _run_process() (populse_mia.user_interface.pipeline_manager.process_mia.ProcessMIA method) _save_tag_values() (populse_mia.user_interface.pipeline_manager.process_mia.ProcessMIA method) _set_anim_frame() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) _set_dialog_size() (populse_mia.user_interface.pop_ups.PopUpDataBrowserCurrentSelection method) _setup_buttons() (populse_mia.user_interface.pop_ups.PopUpDeleteProject method) (populse_mia.user_interface.pop_ups.PopUpInheritanceDict method) _setup_components() (populse_mia.user_interface.data_browser.count_table.CountTable method) _setup_labels() (populse_mia.user_interface.data_browser.count_table.CountTable method) _setup_layout() (populse_mia.user_interface.data_browser.count_table.CountTable method) (populse_mia.user_interface.pipeline_manager.process_library.ProcessLibraryWidget method) (populse_mia.user_interface.pop_ups.PopUpDeleteProject method) _setup_layouts() (populse_mia.user_interface.pop_ups.PopUpAddTag method) _setup_message_box() (populse_mia.user_interface.pop_ups.PopUpDeletedProject method) _setup_radio_buttons() (populse_mia.user_interface.pop_ups.PopUpInheritanceDict method) _setup_search_interface() (populse_mia.user_interface.data_viewer.anatomist_2.mia_anatomist.MiaViewer method) _setup_table() (populse_mia.user_interface.data_browser.count_table.CountTable method) _setup_ui() (populse_mia.user_interface.data_viewer.anatomist.mia_anatomist.MiaViewer method) (populse_mia.user_interface.data_viewer.anatomist_2.mia_anatomist.MiaViewer method) (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.RunProgress method) (populse_mia.user_interface.pipeline_manager.process_library.PackageLibraryDialog method) (populse_mia.user_interface.pop_ups.PopUpAddTag method) (populse_mia.user_interface.pop_ups.PopUpCloneTag method) (populse_mia.user_interface.pop_ups.PopUpClosePipeline method) (populse_mia.user_interface.pop_ups.PopUpDataBrowserCurrentSelection method) (populse_mia.user_interface.pop_ups.PopUpDeleteProject method) (populse_mia.user_interface.pop_ups.PopUpTagSelection method) (populse_mia.user_interface.pop_ups.PopUpVisualizedTags method) _setup_ui_elements() (populse_mia.user_interface.pop_ups.PopUpMultipleSort method) _should_register_plug() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) _show_completion_message() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.RunProgress method) _show_error() (populse_mia.user_interface.pop_ups.PopUpAddTag method) (populse_mia.user_interface.pop_ups.PopUpCloneTag method) _show_error_message() (populse_mia.user_interface.data_browser.modify_table.ModifyTable method) _show_qmessagebox() (populse_mia.user_interface.pipeline_manager.process_library.InstallProcesses method) _show_status_message() (populse_mia.user_interface.pipeline_manager.process_library.InstallProcesses method) _update_database() (populse_mia.data_manager.data_loader.ImportWorker method) _update_existing_package() (populse_mia.user_interface.pipeline_manager.process_library.InstallProcesses method) _updateio_table() (populse_mia.user_interface.pop_ups.PopUpShowHistory method) _validate_input() (populse_mia.user_interface.pipeline_manager.process_library.InstallProcesses method)

A

activate_viewer() (populse_mia.user_interface.data_viewer.data_viewer_tab.DataViewerTab method) add_clinical_tags() (populse_mia.data_manager.project.Project method) (populse_mia.user_interface.main_window.MainWindow method) add_collection() (populse_mia.data_manager.database_mia.DatabaseMiaSchema method) add_column() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) add_columns() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) add_document() (populse_mia.data_manager.database_mia.DatabaseMiaData method) add_element() (populse_mia.user_interface.pop_ups.DefaultValueListCreation method) add_field() (populse_mia.data_manager.database_mia.DatabaseMiaSchema method) add_field_attributes_collection() (populse_mia.data_manager.database_mia.DatabaseMiaSchema method) add_item() (populse_mia.user_interface.data_browser.modify_table.ModifyTable method) add_link() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditor method) add_named_process() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditor method) add_package() (populse_mia.user_interface.pipeline_manager.process_library.PackageLibraryDialog method) (populse_mia.utils.utils.PackagesInstall method) add_package_with_text() (populse_mia.user_interface.pipeline_manager.process_library.PackageLibraryDialog method) add_path() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) add_plug_value_to_database() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) add_rows() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) add_search_bar() (populse_mia.user_interface.data_browser.advanced_search.AdvancedSearch method) add_tag() (populse_mia.user_interface.data_browser.count_table.CountTable method) (populse_mia.user_interface.pipeline_manager.iteration_table.IterationTable method) (populse_mia.user_interface.pop_ups.PopUpMultipleSort method)

add_tag_infos() (populse_mia.user_interface.data_browser.data_browser.DataBrowser method) add_tag_pop_up() (populse_mia.user_interface.data_browser.data_browser.DataBrowser method) add_to_sys_path() (in module populse_mia.main) add_to_syspath() (in module populse_mia.tests.run_mia_test) add_visualized_tag() (populse_mia.tests.run_mia_test.TestMIACase method) addChild() (populse_mia.user_interface.pipeline_manager.process_library.Node method) addMesh() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) addNewView() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) addObject() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) addSavedProject() (populse_mia.data_manager.project_properties.SavedProjects method) addVolume() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) adjust_size() (populse_mia.user_interface.pop_ups.PopUpShowHistory method) admin_mode_switch() (populse_mia.user_interface.pop_ups.PopUpPreferences method) AdvancedSearch (class in populse_mia.user_interface.data_browser.advanced_search) ALL_TYPES (in module populse_mia.data_manager) ALL_UNITS (in module populse_mia.data_manager) AnaSimpleViewer2 (class in populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2) apply_filter() (populse_mia.user_interface.data_browser.advanced_search.AdvancedSearch method) ask_iterated_pipeline_plugs() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) assert_scans_present() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) AttributesFilter (class in populse_mia.user_interface.pipeline_manager.node_controller) attrs() (populse_mia.user_interface.pipeline_manager.process_library.Node method) AUTO_CLOSE_DELAY_MS (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.RunProgress attribute) automaticRunning() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method)

B

batch_update() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) boxSlider() (populse_mia.user_interface.data_browser.mini_viewer.MiniViewer method) BRICK_EXEC (in module populse_mia.data_manager) BRICK_EXEC_TIME (in module populse_mia.data_manager) BRICK_ID (in module populse_mia.data_manager) BRICK_INIT (in module populse_mia.data_manager) BRICK_INIT_TIME (in module populse_mia.data_manager) BRICK_INPUTS (in module populse_mia.data_manager) BRICK_NAME (in module populse_mia.data_manager) BRICK_OUTPUTS (in module populse_mia.data_manager) brick_to_process() (in module populse_mia.data_manager.data_history_inspect) browse_afni() (populse_mia.user_interface.pop_ups.PopUpPreferences method)

browse_ants() (populse_mia.user_interface.pop_ups.PopUpPreferences method) browse_freesurfer() (populse_mia.user_interface.pop_ups.PopUpPreferences method) browse_fsl() (populse_mia.user_interface.pop_ups.PopUpPreferences method) browse_matlab() (populse_mia.user_interface.pop_ups.PopUpPreferences method) browse_matlab_standalone() (populse_mia.user_interface.pop_ups.PopUpPreferences method) browse_mri_conv_path() (populse_mia.user_interface.pop_ups.PopUpPreferences method) browse_mrtrix() (populse_mia.user_interface.pop_ups.PopUpPreferences method) browse_projects_save_path() (populse_mia.user_interface.pop_ups.PopUpPreferences method) browse_resources_path() (populse_mia.user_interface.pop_ups.PopUpPreferences method) browse_spm() (populse_mia.user_interface.pop_ups.PopUpPreferences method) browse_spm_standalone() (populse_mia.user_interface.pop_ups.PopUpPreferences method) build_iterated_pipeline() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method)

C

can_exit() (populse_mia.user_interface.pop_ups.PopUpClosePipeline method) (populse_mia.user_interface.pop_ups.PopUpQuit method) cancel_clicked() (populse_mia.user_interface.pop_ups.PopUpClosePipeline method) (populse_mia.user_interface.pop_ups.PopUpFilterSelection method) (populse_mia.user_interface.pop_ups.PopUpQuit method) (populse_mia.user_interface.pop_ups.PopUpRemoveScan method) (populse_mia.user_interface.pop_ups.PopUpTagSelection method) capsul_engine (populse_mia.software_properties.Config attribute) CapsulNodeController (class in populse_mia.user_interface.pipeline_manager.node_controller) capture_logs() (populse_mia.tests.run_mia_test.TestMIACase method) change_admin_psswd() (populse_mia.user_interface.pop_ups.PopUpPreferences method) change_viewer() (populse_mia.user_interface.data_viewer.data_viewer_tab.DataViewerTab method) changeConfig() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) changeDisplay() (populse_mia.user_interface.data_viewer.anatomist_2.snd_window.NewWindowViewer method) changeIcon() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) changeOpacity() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) changePosValue() (populse_mia.user_interface.data_browser.mini_viewer.MiniViewer method) changeRef() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) check() (populse_mia.user_interface.pipeline_manager.type_editors.PopulseUndefinedControlWidget class method) check_box_cursors_state_changed() (populse_mia.user_interface.data_browser.mini_viewer.MiniViewer method) check_database() (populse_mia.user_interface.main_window.MainWindow method) check_modifications() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditor method) (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) check_package() (in module populse_mia.main) check_python_version() (in module populse_mia.utils.utils) check_requirements() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) check_unsaved_modifications() (populse_mia.user_interface.main_window.MainWindow method) check_value_type() (in module populse_mia.utils.utils) checkState() (populse_mia.user_interface.pop_ups.PopUpSeeAllProjects method) checkviews() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) child() (populse_mia.user_interface.pipeline_manager.process_library.Node method) childCount() (populse_mia.user_interface.pipeline_manager.process_library.Node method) clean_uts_packages() (populse_mia.tests.run_mia_test.TestMIACase method) cleanup() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.RunProgress method) cleanup_older_init() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) cleanup_orphan_bricks() (populse_mia.data_manager.project.Project method) cleanup_orphan_history() (populse_mia.data_manager.project.Project method) cleanup_orphan_nonexisting_files() (populse_mia.data_manager.project.Project method) clear() (populse_mia.tests.run_mia_test.LogCapture method) (populse_mia.user_interface.data_browser.mini_viewer.MiniViewer method) (populse_mia.user_interface.data_viewer.data_viewer.DataViewer method) (populse_mia.user_interface.data_viewer.data_viewer_tab.DataViewerTab method) clear_cell() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) clear_layouts() (populse_mia.user_interface.data_browser.mini_viewer.MiniViewer method) clearLayout() (populse_mia.user_interface.pipeline_manager.node_controller.NodeController method) click_select_tag() (populse_mia.user_interface.pop_ups.PopUpVisualizedTags method) click_unselect_tag() (populse_mia.user_interface.pop_ups.PopUpVisualizedTags method) ClickableLabel (class in populse_mia.user_interface.pop_ups) clickHandler() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) CLINICAL_TAGS (in module populse_mia.data_manager) clone_tag_infos() (populse_mia.user_interface.data_browser.data_browser.DataBrowser method) close() (populse_mia.data_manager.database_mia.DatabaseMIA method) (populse_mia.user_interface.data_viewer.anatomist.mia_anatomist.MiaViewer method) (populse_mia.user_interface.data_viewer.anatomist_2.mia_anatomist.MiaViewer method) (populse_mia.user_interface.data_viewer.anatomist_2.snd_window.NewWindowViewer method) (populse_mia.user_interface.data_viewer.data_viewer.DataViewer method) close_tab() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) closeAll() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) closeEvent() (populse_mia.user_interface.data_viewer.data_viewer_tab.DataViewerTab method) (populse_mia.user_interface.main_window.MainWindow method) COLLECTION_BRICK (in module populse_mia.data_manager) COLLECTION_CURRENT (in module populse_mia.data_manager)

COLLECTION_HISTORY (in module populse_mia.data_manager) COLLECTION_INITIAL (in module populse_mia.data_manager) colorBackgroundList() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) columnCount() (populse_mia.user_interface.pipeline_manager.process_library.DictionaryTreeModel method) complete_attributes_with_database() (populse_mia.user_interface.pipeline_manager.process_mia.MIAProcessCompletionEngine method) complete_nipype_common() (populse_mia.user_interface.pipeline_manager.process_mia.MIAProcessCompletionEngine static method) complete_parameters() (populse_mia.user_interface.pipeline_manager.process_mia.MIAProcessCompletionEngine method) complete_parameters_mia() (populse_mia.user_interface.pipeline_manager.process_mia.MIAProcessCompletionEngine method) complete_pipeline_parameters() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) Config (class in populse_mia.software_properties) connect() (populse_mia.user_interface.pipeline_manager.type_editors.PopulseUndefinedControlWidget class method) connect_actions() (populse_mia.user_interface.data_browser.data_browser.DataBrowser method) connect_mini_viewer() (populse_mia.user_interface.data_browser.data_browser.DataBrowser method) connect_toolbar() (populse_mia.user_interface.data_browser.data_browser.DataBrowser method) context_menu_table() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) control_checkbox_toggled() (populse_mia.user_interface.pop_ups.PopUpPreferences method) controller_value_changed() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) coordsChanged() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) count_scans() (populse_mia.user_interface.data_browser.count_table.CountTable method) count_table_pop_up() (populse_mia.user_interface.data_browser.data_browser.DataBrowser method) CountTable (class in populse_mia.user_interface.data_browser.count_table) create_afni_group() (populse_mia.user_interface.pop_ups.PopUpPreferences method) create_ants_group() (populse_mia.user_interface.pop_ups.PopUpPreferences method) create_appearance_tab() (populse_mia.user_interface.pop_ups.PopUpPreferences method) create_capsul_group() (populse_mia.user_interface.pop_ups.PopUpPreferences method) create_freesurfer_group() (populse_mia.user_interface.pop_ups.PopUpPreferences method) create_fsl_group() (populse_mia.user_interface.pop_ups.PopUpPreferences method) create_global_preferences() (populse_mia.user_interface.pop_ups.PopUpPreferences method) create_horizontal_box() (populse_mia.user_interface.pop_ups.PopUpPreferences method) create_layout() (populse_mia.user_interface.data_browser.data_browser.DataBrowser method) create_matlab_group() (populse_mia.user_interface.pop_ups.PopUpPreferences method) create_mock_exec() (populse_mia.tests.run_mia_test.TestMIANodeController method) create_mock_jar() (populse_mia.tests.run_mia_test.TestMIACase method) create_mrtrix_group() (populse_mia.user_interface.pop_ups.PopUpPreferences method) create_pipeline_tab() (populse_mia.user_interface.pop_ups.PopUpPreferences method) create_populse_preferences() (populse_mia.user_interface.pop_ups.PopUpPreferences method) create_project_pop_up() (populse_mia.user_interface.main_window.MainWindow method) create_projects_preferences() (populse_mia.user_interface.pop_ups.PopUpPreferences method) create_resources_preferences() (populse_mia.user_interface.pop_ups.PopUpPreferences method) create_slider() (populse_mia.user_interface.data_browser.mini_viewer.MiniViewer method) create_spm_group() (populse_mia.user_interface.pop_ups.PopUpPreferences method) create_tabs() (populse_mia.user_interface.main_window.MainWindow method) create_toolbar_view() (populse_mia.user_interface.data_browser.data_browser.DataBrowser method) create_tools_tab() (populse_mia.user_interface.pop_ups.PopUpPreferences method) create_view_actions() (populse_mia.user_interface.main_window.MainWindow method) create_view_menus() (populse_mia.user_interface.main_window.MainWindow method) create_view_window() (populse_mia.user_interface.main_window.MainWindow method) create_widget() (populse_mia.user_interface.pipeline_manager.type_editors.PopulseDirectoryControlWidget static method) (populse_mia.user_interface.pipeline_manager.type_editors.PopulseFileControlWidget static method) (populse_mia.user_interface.pipeline_manager.type_editors.PopulseOffscreenListFileControlWidget static method) (populse_mia.user_interface.pipeline_manager.type_editors.PopulseUndefinedControlWidget static method) createDimensionLabels() (populse_mia.user_interface.data_browser.mini_viewer.MiniViewer method) createEditor() (populse_mia.user_interface.data_browser.data_browser.DateFormatDelegate method) (populse_mia.user_interface.data_browser.data_browser.DateTimeFormatDelegate method) (populse_mia.user_interface.data_browser.data_browser.NumberFormatDelegate method) (populse_mia.user_interface.data_browser.data_browser.TimeFormatDelegate method) createFieldValue() (populse_mia.user_interface.data_browser.mini_viewer.MiniViewer method) createNewWindow() (populse_mia.user_interface.data_viewer.anatomist_2.snd_window.NewWindowViewer method) createTotalWindow() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) createWindow() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) credits() (populse_mia.user_interface.main_window.MainWindow method) current_editor (populse_mia.user_interface.pipeline_manager.iteration_table.IterationTable property) current_viewer() (populse_mia.user_interface.data_viewer.data_viewer_tab.DataViewerTab method)

D

data() (populse_mia.data_manager.database_mia.DatabaseMIA method) (populse_mia.data_manager.database_mia.DatabaseMiaSchema method) (populse_mia.user_interface.pipeline_manager.process_library.DictionaryTreeModel method) (populse_mia.user_interface.pipeline_manager.process_library.Node method) data_history_pipeline() (in module populse_mia.data_manager.data_history_inspect) data_in_value() (in module populse_mia.data_manager.data_history_inspect) DatabaseMIA (class in populse_mia.data_manager.database_mia) DatabaseMiaData (class in populse_mia.data_manager.database_mia) DatabaseMiaSchema (class in populse_mia.data_manager.database_mia) DataBrowser (class in populse_mia.user_interface.data_browser.data_browser) DataViewer (class in populse_mia.user_interface.data_viewer.data_viewer) DataViewerTab (class in populse_mia.user_interface.data_viewer.data_viewer_tab) DateFormatDelegate (class in populse_mia.user_interface.data_browser.data_browser) DATETIME_FORMAT (populse_mia.user_interface.data_browser.data_browser.DateTimeFormatDelegate attribute) DateTimeFormatDelegate (class in populse_mia.user_interface.data_browser.data_browser) default_init_table() (populse_mia.user_interface.pop_ups.DefaultValueListCreation method) DefaultValueListCreation (class in populse_mia.user_interface.pop_ups) DefaultValueQLineEdit (class in populse_mia.user_interface.pop_ups) del_clinical_tags() (populse_mia.data_manager.project.Project method) (populse_mia.user_interface.main_window.MainWindow method) del_node() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditor method) delete_from_brick() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) delete_package() (populse_mia.user_interface.pipeline_manager.process_library.PackageLibraryDialog method) delete_package_with_text() (populse_mia.user_interface.pipeline_manager.process_library.PackageLibraryDialog method) delete_project() (populse_mia.user_interface.main_window.MainWindow method) deleteObjects() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method)

deleteObjectsFromFiles() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) deleteTotalWindow() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) dict4runtime_update() (in module populse_mia.utils.utils) DictionaryTreeModel (class in populse_mia.user_interface.pipeline_manager.process_library) disableButton() (populse_mia.user_interface.data_viewer.anatomist_2.snd_window.NewWindowViewer method) disableButtons() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) disconnect() (populse_mia.user_interface.pipeline_manager.type_editors.PopulseUndefinedControlWidget static method) display_file() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) display_files() (populse_mia.user_interface.data_viewer.anatomist.mia_anatomist.MiaViewer method) (populse_mia.user_interface.data_viewer.anatomist_2.mia_anatomist.MiaViewer method) (populse_mia.user_interface.data_viewer.data_viewer.DataViewer method) display_filter() (populse_mia.user_interface.pipeline_manager.node_controller.NodeController method) display_parameters() (populse_mia.user_interface.pipeline_manager.node_controller.CapsulNodeController method) (populse_mia.user_interface.pipeline_manager.node_controller.NodeController method) display_unreset_values() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) displayConditionRules() (populse_mia.user_interface.data_browser.advanced_search.AdvancedSearch method) displayed_files() (populse_mia.user_interface.data_viewer.anatomist.mia_anatomist.MiaViewer method) (populse_mia.user_interface.data_viewer.anatomist_2.mia_anatomist.MiaViewer method) (populse_mia.user_interface.data_viewer.data_viewer.DataViewer method) displayNodeParameters() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) displayPosValue() (populse_mia.user_interface.data_browser.mini_viewer.MiniViewer method) displayValueRules() (populse_mia.user_interface.data_browser.advanced_search.AdvancedSearch method) do_not_save_clicked() (populse_mia.user_interface.pop_ups.PopUpClosePipeline method) (populse_mia.user_interface.pop_ups.PopUpQuit method) documentation() (populse_mia.user_interface.main_window.MainWindow static method) dragEnterEvent() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) dropEvent() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method)

E

edit_capsul_config() (populse_mia.user_interface.pop_ups.PopUpPreferences method) edit_config_file() (populse_mia.user_interface.pop_ups.PopUpPreferences method) edit_table_data_values() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) editAdd() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) editDelete() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) editRemove() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) emit() (populse_mia.tests.run_mia_test.LogCapture method) emit_iteration_table_updated() (populse_mia.user_interface.pipeline_manager.iteration_table.IterationTable method) emit_node_clicked() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method)

emit_pipeline_saved() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) emit_switch_clicked() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) enableSliders() (populse_mia.user_interface.data_browser.mini_viewer.MiniViewer method) enableVolumeRendering() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) end_progress() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.RunProgress method) eventAutoSubscription() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.LeftSimple3DControl method) (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.VolRenderControl method) execute_QDialogAccept() (populse_mia.tests.run_mia_test.TestMIACase method) export_node_plugs() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditor method) export_to_db_scans() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method)

F

factory_id (populse_mia.user_interface.pipeline_manager.process_mia.MIAProcessCompletionEngineFactory attribute) FIELD_ATTRIBUTES_COLLECTION (in module populse_mia.data_manager) FIELD_TYPE_BOOLEAN (in module populse_mia.data_manager) FIELD_TYPE_DATE (in module populse_mia.data_manager) FIELD_TYPE_DATETIME (in module populse_mia.data_manager) FIELD_TYPE_FLOAT (in module populse_mia.data_manager) FIELD_TYPE_INTEGER (in module populse_mia.data_manager) FIELD_TYPE_JSON (in module populse_mia.data_manager) FIELD_TYPE_LIST_BOOLEAN (in module populse_mia.data_manager) FIELD_TYPE_LIST_DATE (in module populse_mia.data_manager) FIELD_TYPE_LIST_DATETIME (in module populse_mia.data_manager) FIELD_TYPE_LIST_FLOAT (in module populse_mia.data_manager) FIELD_TYPE_LIST_INTEGER (in module populse_mia.data_manager) FIELD_TYPE_LIST_JSON (in module populse_mia.data_manager) FIELD_TYPE_LIST_STRING (in module populse_mia.data_manager) FIELD_TYPE_LIST_TIME (in module populse_mia.data_manager) FIELD_TYPE_MAPPING (in module populse_mia.data_manager) FIELD_TYPE_STRING (in module populse_mia.data_manager) FIELD_TYPE_TIME (in module populse_mia.data_manager) file_clicked() (populse_mia.user_interface.pop_ups.PopUpShowHistory method) file_to_choose() (populse_mia.user_interface.pop_ups.PopUpAddPath method) fileOpen() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) files_in_project() (populse_mia.data_manager.project.Project method) fill_cells_update_table() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) fill_first_tags() (populse_mia.user_interface.data_browser.count_table.CountTable method) fill_headers() (populse_mia.user_interface.data_browser.count_table.CountTable method) (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method)

fill_input() (populse_mia.user_interface.pop_ups.PopUpSaveProjectAs method) fill_item() (populse_mia.user_interface.pipeline_manager.process_library.PackageLibrary method) fill_last_tag() (populse_mia.user_interface.data_browser.count_table.CountTable method) fill_table() (populse_mia.user_interface.data_browser.modify_table.ModifyTable method) fill_values() (populse_mia.user_interface.data_browser.count_table.CountTable method) (populse_mia.user_interface.pipeline_manager.iteration_table.IterationTable method) (populse_mia.user_interface.pop_ups.PopUpMultipleSort method) Filter (class in populse_mia.data_manager.filter) filter_attributes() (populse_mia.user_interface.pipeline_manager.node_controller.CapsulNodeController method) filter_clicked() (populse_mia.user_interface.pipeline_manager.type_editors.PopulseDirectoryControlWidget static method) (populse_mia.user_interface.pipeline_manager.type_editors.PopulseFileControlWidget static method) (populse_mia.user_interface.pipeline_manager.type_editors.PopulseOffscreenListFileControlWidget static method) filter_documents() (populse_mia.data_manager.database_mia.DatabaseMiaData method) (populse_mia.user_interface.data_viewer.anatomist.mia_anatomist.MiaViewer method) (populse_mia.user_interface.data_viewer.anatomist_2.mia_anatomist.MiaViewer method) filter_values() (populse_mia.user_interface.pipeline_manager.iteration_table.IterationTable method) FilterWidget (class in populse_mia.user_interface.pipeline_manager.node_controller) find_associated_bricks() (populse_mia.user_interface.pop_ups.PopUpShowHistory method) find_filename() (in module populse_mia.user_interface.pipeline_manager.pipeline_editor) find_item_by_data() (populse_mia.tests.run_mia_test.TestMIACase method) find_process_from_plug() (populse_mia.user_interface.pop_ups.PopUpShowHistory method) find_procs_with_output() (in module populse_mia.data_manager.data_history_inspect) find_type() (populse_mia.user_interface.pop_ups.PopUpAddPath method) findChar() (populse_mia.user_interface.pop_ups.PopUpPreferences method) finish_execution() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) finished_bricks() (populse_mia.data_manager.project.Project method) flags() (populse_mia.user_interface.pipeline_manager.process_library.DictionaryTreeModel method) format_filter_value() (populse_mia.user_interface.pipeline_manager.iteration_table.IterationTable method)

G

garbage_collect() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) generate_filter() (populse_mia.data_manager.filter.Filter method) generate_tree() (populse_mia.user_interface.pipeline_manager.process_library.PackageLibrary method) get_admin_hash() (populse_mia.software_properties.Config method) get_afni_path() (populse_mia.software_properties.Config method) get_ants_path() (populse_mia.software_properties.Config method) get_attribute_values() (populse_mia.user_interface.pipeline_manager.process_mia.MIAProcessCompletionEngine method) get_capsul_config() (populse_mia.software_properties.Config method) get_capsul_engine() (populse_mia.software_properties.Config static method) (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) get_cell_text() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) get_collection_names() (populse_mia.data_manager.database_mia.DatabaseMiaData method) get_completion_engine() (populse_mia.user_interface.pipeline_manager.process_mia.MIAProcessCompletionEngineFactory method) get_controller_version() (populse_mia.user_interface.main_window.MainWindow method) get_current_editor() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) get_current_filename() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditor method) (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) get_current_filter() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) get_current_pipeline() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) get_current_tab_name() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) get_data_history() (in module populse_mia.data_manager.data_history_inspect) (populse_mia.data_manager.project.Project method) get_data_history_bricks() (in module populse_mia.data_manager.data_history_inspect) get_data_history_processes() (in module populse_mia.data_manager.data_history_inspect) get_db_and_databrowser_value() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) get_db_field_value() (in module populse_mia.utils.utils) get_direct_proc_ancestors() (in module populse_mia.data_manager.data_history_inspect) get_document() (populse_mia.data_manager.database_mia.DatabaseMiaData method) get_document_names() (in module populse_mia.utils.utils) (populse_mia.data_manager.database_mia.DatabaseMiaData method) get_editor_by_file_name() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) get_editor_by_index() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) get_editor_by_tab_name() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) get_field_attributes() (populse_mia.data_manager.database_mia.DatabaseMiaData method) get_field_names() (in module populse_mia.utils.utils) (populse_mia.data_manager.database_mia.DatabaseMiaData method) get_filename() (populse_mia.user_interface.pipeline_manager.process_library.InstallProcesses method) (populse_mia.user_interface.pop_ups.PopUpNewProject method) (populse_mia.user_interface.pop_ups.PopUpOpenProject method) get_filename_by_index() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) get_filenames_in_value() (in module populse_mia.data_manager.data_history_inspect) get_filters() (populse_mia.user_interface.data_browser.advanced_search.AdvancedSearch method) get_finished_bricks_in_pipeline() (populse_mia.data_manager.project.Project method) get_finished_bricks_in_workflows() (populse_mia.data_manager.project.Project method) get_freesurfer_setup() (populse_mia.software_properties.Config method) get_fsl_config() (populse_mia.software_properties.Config method) get_history_brick_process() (in module populse_mia.data_manager.data_history_inspect) get_index_by_editor() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) get_index_by_filename() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) get_index_by_tab_name() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) get_index_from_plug_name() (populse_mia.user_interface.pipeline_manager.node_controller.NodeController method) get_index_insertion() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) get_mainwindow_maximized() (populse_mia.software_properties.Config method) get_mainwindow_size() (populse_mia.software_properties.Config method) get_matlab_command() (populse_mia.software_properties.Config method) get_matlab_path() (populse_mia.software_properties.Config method) get_matlab_standalone_path() (populse_mia.software_properties.Config method) get_max_projects() (populse_mia.software_properties.Config method)

get_max_thumbnails() (populse_mia.software_properties.Config method) get_missing_mandatory_parameters() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) get_mri_conv_path() (populse_mia.software_properties.Config method) get_mrtrix_path() (populse_mia.software_properties.Config method) get_new_mesh2d_color() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) get_new_test_project() (populse_mia.tests.run_mia_test.TestMIACase method) get_opened_projects() (populse_mia.software_properties.Config method) get_orphan_bricks() (populse_mia.data_manager.project.Project method) get_orphan_history() (populse_mia.data_manager.project.Project method) get_orphan_nonexisting_files() (populse_mia.data_manager.project.Project method) get_path() (in module populse_mia.user_interface.pipeline_manager.pipeline_editor) get_path_completion_engine() (populse_mia.user_interface.pipeline_manager.process_mia.MIAProcessCompletionEngine method) get_pipeline_or_process() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) get_populse_mia_gitversion() (in module populse_mia.info) get_primary_key_name() (populse_mia.data_manager.database_mia.DatabaseMiaData method) get_proc_ancestors_via_tmp() (in module populse_mia.data_manager.data_history_inspect) get_project() (populse_mia.user_interface.pipeline_manager.process_mia.MIAProcessCompletionEngine static method) get_projects_save_path() (populse_mia.software_properties.Config method) get_properties_path() (populse_mia.software_properties.Config method) get_referential() (populse_mia.software_properties.Config method) get_resources_path() (populse_mia.software_properties.Config method) get_scan_row() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) get_shown_tags() (in module populse_mia.utils.utils) (populse_mia.data_manager.database_mia.DatabaseMiaData method) get_spm_path() (populse_mia.software_properties.Config method) get_spm_standalone_path() (populse_mia.software_properties.Config method) get_tab_name_by_index() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) get_tag_column() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) get_use_afni() (populse_mia.software_properties.Config method) get_use_ants() (populse_mia.software_properties.Config method) get_use_clinical() (populse_mia.software_properties.Config method) get_use_freesurfer() (populse_mia.software_properties.Config method) get_use_fsl() (populse_mia.software_properties.Config method) get_use_matlab() (populse_mia.software_properties.Config method) get_use_matlab_standalone() (populse_mia.software_properties.Config method) get_use_mrtrix() (populse_mia.software_properties.Config method) get_use_spm() (populse_mia.software_properties.Config method) get_use_spm_standalone() (populse_mia.software_properties.Config method) get_user_level() (populse_mia.software_properties.Config method) get_user_mode() (populse_mia.software_properties.Config method) get_value() (in module populse_mia.utils.utils) (populse_mia.data_manager.database_mia.DatabaseMiaData method) get_visible_scans() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) getBackgroundColor() (populse_mia.software_properties.Config method) getChainCursors() (populse_mia.software_properties.Config method) getDate() (populse_mia.data_manager.project.Project method) getFilter() (populse_mia.data_manager.project.Project method) getFilterName() (populse_mia.data_manager.project.Project method) getName() (populse_mia.data_manager.project.Project method) getNbAllSlicesMax() (populse_mia.software_properties.Config method) getNode() (populse_mia.user_interface.pipeline_manager.process_library.DictionaryTreeModel method) getShowAllSlices() (populse_mia.software_properties.Config method) getSortedTag() (populse_mia.data_manager.project.Project method) getSortOrder() (populse_mia.data_manager.project.Project method) getSourceImageDir() (populse_mia.software_properties.Config method) getTextColor() (populse_mia.software_properties.Config method) getThumbnailTag() (populse_mia.software_properties.Config method) getViewerConfig() (populse_mia.software_properties.Config method) getViewerFramerate() (populse_mia.software_properties.Config method) getViewsToDisplay() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method)

H

handle_pipeline_nodes() (populse_mia.user_interface.pop_ups.PopUpShowHistory method) has_collection() (populse_mia.data_manager.database_mia.DatabaseMiaData method) has_document() (populse_mia.data_manager.database_mia.DatabaseMiaData method) has_pipeline_nodes() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) hasUnsavedModifications() (populse_mia.data_manager.project.Project method)

headerData() (populse_mia.user_interface.pipeline_manager.process_library.DictionaryTreeModel method) highlight_selected_node() (populse_mia.user_interface.pop_ups.PopUpShowHistory method) HISTORY_BRICKS (in module populse_mia.data_manager) HISTORY_ID (in module populse_mia.data_manager) HISTORY_PIPELINE (in module populse_mia.data_manager)

I

ignore (populse_mia.user_interface.pipeline_manager.process_mia.ProcessMIA attribute) ignore_clicked() (populse_mia.user_interface.pop_ups.PopUpInheritanceDict method) ignore_node (populse_mia.user_interface.pipeline_manager.process_mia.ProcessMIA attribute) ignore_node_clicked() (populse_mia.user_interface.pop_ups.PopUpInheritanceDict method) ignoreall_clicked() (populse_mia.user_interface.pop_ups.PopUpInheritanceDict method) image2DModifications() (populse_mia.user_interface.data_browser.mini_viewer.MiniViewer method) image_to_pixmap() (populse_mia.user_interface.data_browser.mini_viewer.MiniViewer method) import_data() (populse_mia.user_interface.main_window.MainWindow method) import_file() (in module populse_mia.user_interface.pipeline_manager.process_library) ImportProgress (class in populse_mia.data_manager.data_loader) ImportWorker (class in populse_mia.data_manager.data_loader) index() (populse_mia.user_interface.pipeline_manager.process_library.DictionaryTreeModel method) indexImage() (populse_mia.user_interface.data_browser.mini_viewer.MiniViewer method) init_default_traits() (populse_mia.user_interface.pipeline_manager.process_mia.ProcessMIA method) init_filters() (populse_mia.data_manager.project.Project method) init_global_handlers() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) init_pipeline() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) init_process() (populse_mia.user_interface.pipeline_manager.process_mia.ProcessMIA method)

initialize() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) initialize_components() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) initialize_pipeline() (populse_mia.user_interface.pop_ups.PopUpShowHistory method) insertChild() (populse_mia.user_interface.pipeline_manager.process_library.Node method) insertRows() (populse_mia.user_interface.pipeline_manager.process_library.DictionaryTreeModel method) install() (populse_mia.user_interface.pipeline_manager.process_library.InstallProcesses method) install_processes_pop_up() (populse_mia.user_interface.main_window.MainWindow method) (populse_mia.user_interface.pipeline_manager.process_library.PackageLibraryDialog method) InstallProcesses (class in populse_mia.user_interface.pipeline_manager.process_library) io_value_is_scan() (populse_mia.user_interface.pop_ups.PopUpShowHistory method) is_data_entry() (in module populse_mia.data_manager.data_history_inspect) is_valid() (populse_mia.user_interface.pipeline_manager.type_editors.PopulseUndefinedControlWidget static method) isAutoSave() (populse_mia.software_properties.Config method) isControlV1() (populse_mia.software_properties.Config method) isRadioView() (populse_mia.software_properties.Config method) item_clicked() (populse_mia.user_interface.pop_ups.PopUpTagSelection method) item_to_path() (populse_mia.user_interface.pop_ups.PopUpSeeAllProjects method) IterationTable (class in populse_mia.user_interface.pipeline_manager.iteration_table)

J

json_format() (populse_mia.data_manager.filter.Filter method)

K

key (populse_mia.user_interface.pipeline_manager.process_mia.ProcessMIA attribute)

keyPressEvent() (populse_mia.user_interface.pipeline_manager.process_library.ProcessLibrary method)

L

last_window_closed() (populse_mia.user_interface.main_window.MainWindow static method) launch_mia() (in module populse_mia.utils.utils) launch_search() (populse_mia.user_interface.data_browser.advanced_search.AdvancedSearch method) layout_view() (populse_mia.user_interface.pipeline_manager.node_controller.FilterWidget method) (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) LeftSimple3DControl (class in populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2) list_outputs() (populse_mia.user_interface.pipeline_manager.process_mia.ProcessMIA method) load_config() (populse_mia.user_interface.pipeline_manager.process_library.PackageLibraryDialog static method) (populse_mia.user_interface.pipeline_manager.process_library.ProcessLibraryWidget static method) (populse_mia.user_interface.pop_ups.PopUpPreferences method) load_data() (populse_mia.user_interface.pop_ups.PopUpShowHistory method) load_dictionary() (populse_mia.user_interface.pipeline_manager.process_library.ProcessLibrary method) load_nii() (populse_mia.user_interface.pipeline_manager.process_mia.ProcessMIA method)

load_packages() (populse_mia.user_interface.pipeline_manager.process_library.PackageLibraryDialog method) (populse_mia.user_interface.pipeline_manager.process_library.ProcessLibraryWidget method) load_pipeline() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) load_pipeline_data() (populse_mia.user_interface.pop_ups.PopUpShowHistory method) load_pipeline_parameters() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) load_viewer() (populse_mia.user_interface.data_viewer.data_viewer_tab.DataViewerTab method) loadConfig() (populse_mia.software_properties.Config method) loadObject() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) loadParameters() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) loadPipeline() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) loadProperties() (populse_mia.data_manager.project.Project method) loadSavedProjects() (populse_mia.data_manager.project_properties.SavedProjects method) log() (populse_mia.user_interface.pipeline_manager.process_library.Node method) LogCapture (class in populse_mia.tests.run_mia_test)

M

main() (in module populse_mia.main) MainWindow (class in populse_mia.user_interface.main_window) make_initResult() (populse_mia.user_interface.pipeline_manager.process_mia.ProcessMIA method) mem_release() (populse_mia.user_interface.data_browser.mini_viewer.MiniViewer method) message_already_exists() (in module populse_mia.utils.utils) MetaDataViewer (class in populse_mia.user_interface.data_viewer.data_viewer) MIAProcessCompletionEngine (class in populse_mia.user_interface.pipeline_manager.process_mia) MIAProcessCompletionEngineFactory (class in populse_mia.user_interface.pipeline_manager.process_mia) MiaViewer (class in populse_mia.user_interface.data_viewer.anatomist.mia_anatomist) (class in populse_mia.user_interface.data_viewer.anatomist_2.mia_anatomist) mimeData() (populse_mia.user_interface.pipeline_manager.process_library.DictionaryTreeModel method) mimeTypes() (populse_mia.user_interface.pipeline_manager.process_library.DictionaryTreeModel method) MIN_PROGRESS_WIDTH (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.RunProgress attribute) MiniViewer (class in populse_mia.user_interface.data_browser.mini_viewer) ModifyTable (class in populse_mia.user_interface.data_browser.modify_table) module populse_mia populse_mia.cli_args populse_mia.data_manager populse_mia.data_manager.data_history_inspect populse_mia.data_manager.data_loader populse_mia.data_manager.database_mia populse_mia.data_manager.filter populse_mia.data_manager.project populse_mia.data_manager.project_properties populse_mia.info populse_mia.main populse_mia.software_properties populse_mia.sources_images populse_mia.tests populse_mia.tests.run_mia_test populse_mia.user_interface populse_mia.user_interface.data_browser populse_mia.user_interface.data_browser.advanced_search populse_mia.user_interface.data_browser.count_table populse_mia.user_interface.data_browser.data_browser populse_mia.user_interface.data_browser.mini_viewer populse_mia.user_interface.data_browser.modify_table populse_mia.user_interface.data_browser.rapid_search populse_mia.user_interface.data_viewer populse_mia.user_interface.data_viewer.anatomist populse_mia.user_interface.data_viewer.anatomist.mia_anatomist populse_mia.user_interface.data_viewer.anatomist_2 populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2 populse_mia.user_interface.data_viewer.anatomist_2.mia_anatomist populse_mia.user_interface.data_viewer.anatomist_2.resources populse_mia.user_interface.data_viewer.anatomist_2.resources_snd_window populse_mia.user_interface.data_viewer.anatomist_2.snd_window populse_mia.user_interface.data_viewer.data_viewer populse_mia.user_interface.data_viewer.data_viewer_tab populse_mia.user_interface.main_window populse_mia.user_interface.pipeline_manager populse_mia.user_interface.pipeline_manager.iteration_table populse_mia.user_interface.pipeline_manager.node_controller populse_mia.user_interface.pipeline_manager.pipeline_editor populse_mia.user_interface.pipeline_manager.pipeline_manager_tab populse_mia.user_interface.pipeline_manager.plug_filter populse_mia.user_interface.pipeline_manager.process_library populse_mia.user_interface.pipeline_manager.process_mia populse_mia.user_interface.pipeline_manager.type_editors populse_mia.user_interface.pop_ups populse_mia.utils populse_mia.utils.utils

mousePressEvent() (populse_mia.user_interface.pipeline_manager.process_library.ProcessLibrary method) (populse_mia.user_interface.pop_ups.ClickableLabel method) (populse_mia.user_interface.pop_ups.DefaultValueQLineEdit method) (populse_mia.user_interface.pop_ups.QLabel_clickable method) mouseReleaseEvent() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) move_splitter() (populse_mia.user_interface.data_browser.data_browser.DataBrowser method) multiple_sort_infos() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) multiple_sort_pop_up() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method)

N

name (populse_mia.user_interface.pipeline_manager.process_library.Node property) navigImage() (populse_mia.user_interface.data_browser.mini_viewer.MiniViewer method) new_tab() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) newDisplay() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) newPalette() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) NewWindowViewer (class in populse_mia.user_interface.data_viewer.anatomist_2.snd_window) no_all_clicked() (populse_mia.user_interface.pop_ups.PopUpRemoveScan method)

Node (class in populse_mia.user_interface.pipeline_manager.process_library) node_selected() (populse_mia.user_interface.pop_ups.PopUpShowHistory method) node_structure_from_dict() (in module populse_mia.user_interface.pipeline_manager.process_library) NodeController (class in populse_mia.user_interface.pipeline_manager.node_controller) normalize_scan_path() (populse_mia.user_interface.pipeline_manager.node_controller.FilterWidget method) NOT_DEFINED_VALUE (in module populse_mia.data_manager) NumberFormatDelegate (class in populse_mia.user_interface.data_browser.data_browser)

O

object_properties() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) objectLoaded() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) ok_action() (populse_mia.user_interface.pop_ups.PopUpAddTag method) (populse_mia.user_interface.pop_ups.PopUpCloneTag method) (populse_mia.user_interface.pop_ups.PopUpRemoveTag method) ok_clicked() (populse_mia.user_interface.pipeline_manager.node_controller.AttributesFilter method) (populse_mia.user_interface.pipeline_manager.node_controller.FilterWidget method) (populse_mia.user_interface.pipeline_manager.plug_filter.PlugFilter method) (populse_mia.user_interface.pipeline_manager.process_library.PackageLibraryDialog method) (populse_mia.user_interface.pop_ups.PopUpDataBrowserCurrentSelection method) (populse_mia.user_interface.pop_ups.PopUpDeleteProject method) (populse_mia.user_interface.pop_ups.PopUpFilterSelection method) (populse_mia.user_interface.pop_ups.PopUpInheritanceDict method) (populse_mia.user_interface.pop_ups.PopUpPreferences method) (populse_mia.user_interface.pop_ups.PopUpProperties method) (populse_mia.user_interface.pop_ups.PopUpSelectFilter method) (populse_mia.user_interface.pop_ups.PopUpSelectIteration method) (populse_mia.user_interface.pop_ups.PopUpSelectTag method) (populse_mia.user_interface.pop_ups.PopUpSelectTagCountTable method) (populse_mia.user_interface.pop_ups.PopUpTagSelection method)

okall_clicked() (populse_mia.user_interface.pop_ups.PopUpInheritanceDict method) on_activated() (populse_mia.user_interface.pop_ups.PopUpAddTag method) on_cell_changed() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) on_clicked() (populse_mia.user_interface.pop_ups.PopUpInheritanceDict method) onProgress() (populse_mia.data_manager.data_loader.ImportProgress method) open_anatomist_main_window() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) open_filter() (populse_mia.user_interface.data_browser.data_browser.DataBrowser method) (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) open_filter_infos() (populse_mia.user_interface.data_browser.data_browser.DataBrowser method) open_pkg_lib() (populse_mia.user_interface.pipeline_manager.process_library.ProcessLibraryWidget method) open_project() (populse_mia.user_interface.pop_ups.PopUpSeeAllProjects method) open_project_pop_up() (populse_mia.user_interface.main_window.MainWindow method) open_recent_project() (populse_mia.user_interface.main_window.MainWindow method) open_shell() (populse_mia.user_interface.main_window.MainWindow method) open_sub_pipeline() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) openTagsPopUp() (populse_mia.user_interface.data_browser.mini_viewer.MiniViewer method)

P

package_library_pop_up() (populse_mia.user_interface.main_window.MainWindow method) PackageLibrary (class in populse_mia.user_interface.pipeline_manager.process_library) PackageLibraryDialog (class in populse_mia.user_interface.pipeline_manager.process_library) PackagesInstall (class in populse_mia.utils.utils) parameters_changed() (populse_mia.user_interface.pipeline_manager.node_controller.CapsulNodeController method) parent() (populse_mia.user_interface.pipeline_manager.process_library.DictionaryTreeModel method) (populse_mia.user_interface.pipeline_manager.process_library.Node method) parse_args() (in module populse_mia.cli_args) path_attributes() (populse_mia.user_interface.pipeline_manager.process_mia.MIAProcessCompletionEngine method) PipelineEditor (class in populse_mia.user_interface.pipeline_manager.pipeline_editor) PipelineEditorTabs (class in populse_mia.user_interface.pipeline_manager.pipeline_editor) PipelineManagerTab (class in populse_mia.user_interface.pipeline_manager.pipeline_manager_tab) PlugFilter (class in populse_mia.user_interface.pipeline_manager.plug_filter) populse_mia module populse_mia.cli_args module populse_mia.data_manager module populse_mia.data_manager.data_history_inspect module populse_mia.data_manager.data_loader module populse_mia.data_manager.database_mia module populse_mia.data_manager.filter module populse_mia.data_manager.project module populse_mia.data_manager.project_properties module populse_mia.info module populse_mia.main module populse_mia.software_properties module populse_mia.sources_images module populse_mia.tests module populse_mia.tests.run_mia_test module populse_mia.user_interface module populse_mia.user_interface.data_browser module populse_mia.user_interface.data_browser.advanced_search module populse_mia.user_interface.data_browser.count_table module populse_mia.user_interface.data_browser.data_browser module populse_mia.user_interface.data_browser.mini_viewer module populse_mia.user_interface.data_browser.modify_table module populse_mia.user_interface.data_browser.rapid_search module populse_mia.user_interface.data_viewer module populse_mia.user_interface.data_viewer.anatomist module populse_mia.user_interface.data_viewer.anatomist.mia_anatomist module populse_mia.user_interface.data_viewer.anatomist_2 module populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2 module populse_mia.user_interface.data_viewer.anatomist_2.mia_anatomist module populse_mia.user_interface.data_viewer.anatomist_2.resources module populse_mia.user_interface.data_viewer.anatomist_2.resources_snd_window module populse_mia.user_interface.data_viewer.anatomist_2.snd_window module

populse_mia.user_interface.data_viewer.data_viewer module populse_mia.user_interface.data_viewer.data_viewer_tab module populse_mia.user_interface.main_window module populse_mia.user_interface.pipeline_manager module populse_mia.user_interface.pipeline_manager.iteration_table module populse_mia.user_interface.pipeline_manager.node_controller module populse_mia.user_interface.pipeline_manager.pipeline_editor module populse_mia.user_interface.pipeline_manager.pipeline_manager_tab module populse_mia.user_interface.pipeline_manager.plug_filter module populse_mia.user_interface.pipeline_manager.process_library module populse_mia.user_interface.pipeline_manager.process_mia module populse_mia.user_interface.pipeline_manager.type_editors module populse_mia.user_interface.pop_ups module populse_mia.utils module populse_mia.utils.utils module PopulseDirectoryControlWidget (class in populse_mia.user_interface.pipeline_manager.type_editors) PopulseFileControlWidget (class in populse_mia.user_interface.pipeline_manager.type_editors) PopulseOffscreenListFileControlWidget (class in populse_mia.user_interface.pipeline_manager.type_editors) PopulseUndefinedControlWidget (class in populse_mia.user_interface.pipeline_manager.type_editors) popup_objects() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) PopUpAddPath (class in populse_mia.user_interface.pop_ups) PopUpAddTag (class in populse_mia.user_interface.pop_ups) PopUpCloneTag (class in populse_mia.user_interface.pop_ups) PopUpClosePipeline (class in populse_mia.user_interface.pop_ups) PopUpDataBrowserCurrentSelection (class in populse_mia.user_interface.pop_ups) PopUpDeletedProject (class in populse_mia.user_interface.pop_ups) PopUpDeleteProject (class in populse_mia.user_interface.pop_ups) PopUpFilterSelection (class in populse_mia.user_interface.pop_ups) PopUpInformation (class in populse_mia.user_interface.pop_ups) PopUpInheritanceDict (class in populse_mia.user_interface.pop_ups) PopUpMultipleSort (class in populse_mia.user_interface.pop_ups) PopUpNewProject (class in populse_mia.user_interface.pop_ups) PopUpOpenProject (class in populse_mia.user_interface.pop_ups) PopUpPreferences (class in populse_mia.user_interface.pop_ups) PopUpProperties (class in populse_mia.user_interface.pop_ups) PopUpQuit (class in populse_mia.user_interface.pop_ups) PopUpRemoveScan (class in populse_mia.user_interface.pop_ups) PopUpRemoveTag (class in populse_mia.user_interface.pop_ups) PopUpSaveProjectAs (class in populse_mia.user_interface.pop_ups) PopUpSeeAllProjects (class in populse_mia.user_interface.pop_ups) PopUpSelectFilter (class in populse_mia.user_interface.pop_ups) PopUpSelectIteration (class in populse_mia.user_interface.pop_ups) PopUpSelectTag (class in populse_mia.user_interface.pop_ups) PopUpSelectTagCountTable (class in populse_mia.user_interface.pop_ups) PopUpShowHistory (class in populse_mia.user_interface.pop_ups) PopUpTagSelection (class in populse_mia.user_interface.pop_ups) PopUpVisualizedTags (class in populse_mia.user_interface.pop_ups) postprocess_pipeline_execution() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) preferences() (populse_mia.user_interface.data_viewer.anatomist_2.mia_anatomist.MiaViewer method) prepare_filter() (populse_mia.user_interface.data_browser.count_table.CountTable static method) (populse_mia.user_interface.data_browser.rapid_search.RapidSearch static method) prepare_filters() (populse_mia.user_interface.data_browser.advanced_search.AdvancedSearch static method) prepare_not_defined_filter() (populse_mia.user_interface.data_browser.rapid_search.RapidSearch method) ProcessLibrary (class in populse_mia.user_interface.pipeline_manager.process_library) ProcessLibraryWidget (class in populse_mia.user_interface.pipeline_manager.process_library) ProcessMIA (class in populse_mia.user_interface.pipeline_manager.process_mia) proclibview_nipype_reset_state() (populse_mia.tests.run_mia_test.TestMIACase method) proclibview_nipype_state() (populse_mia.tests.run_mia_test.TestMIACase method) Project (class in populse_mia.data_manager.project) project_properties_pop_up() (populse_mia.user_interface.main_window.MainWindow method) protected_logging() (in module populse_mia.user_interface.pipeline_manager.pipeline_manager_tab) ProtoProcess (class in populse_mia.data_manager.data_history_inspect)

Q

qCleanupResources() (in module populse_mia.user_interface.data_viewer.anatomist_2.resources) (in module populse_mia.user_interface.data_viewer.anatomist_2.resources_snd_window) qInitResources() (in module populse_mia.user_interface.data_viewer.anatomist_2.resources) (in module populse_mia.user_interface.data_viewer.anatomist_2.resources_snd_window)

QLabel_clickable (class in populse_mia.user_interface.pop_ups) qt_message_handler() (in module populse_mia.main) (in module populse_mia.tests.run_mia_test)

R

RapidSearch (class in populse_mia.user_interface.data_browser.rapid_search) read_log() (in module populse_mia.data_manager.data_loader) recursive_checks() (populse_mia.user_interface.pipeline_manager.process_library.PackageLibrary method) recursive_checks_from_child() (populse_mia.user_interface.pipeline_manager.process_library.PackageLibrary method) redo() (populse_mia.data_manager.project.Project method) (populse_mia.user_interface.main_window.MainWindow method) (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) refresh_layout() (populse_mia.user_interface.data_browser.count_table.CountTable method) (populse_mia.user_interface.pipeline_manager.iteration_table.IterationTable method) (populse_mia.user_interface.pop_ups.PopUpMultipleSort method) refresh_search() (populse_mia.user_interface.data_browser.advanced_search.AdvancedSearch method) register_completion_attributes() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) registerObject() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) relax_nipype_exists_constraints() (populse_mia.user_interface.pipeline_manager.process_mia.ProcessMIA method) release_process() (populse_mia.user_interface.pipeline_manager.node_controller.CapsulNodeController method) (populse_mia.user_interface.pipeline_manager.node_controller.NodeController method) rem_last_item() (populse_mia.user_interface.data_browser.modify_table.ModifyTable method) remove_document() (in module populse_mia.utils.utils) (populse_mia.data_manager.database_mia.DatabaseMiaData method) remove_element() (populse_mia.user_interface.pop_ups.DefaultValueListCreation method) remove_field() (populse_mia.data_manager.database_mia.DatabaseMiaSchema method) remove_field_attributes() (populse_mia.data_manager.database_mia.DatabaseMiaSchema method) remove_files() (populse_mia.user_interface.data_viewer.anatomist.mia_anatomist.MiaViewer method) (populse_mia.user_interface.data_viewer.anatomist_2.mia_anatomist.MiaViewer method) (populse_mia.user_interface.data_viewer.data_viewer.DataViewer method) remove_package() (populse_mia.user_interface.pipeline_manager.process_library.PackageLibraryDialog method) remove_package_with_text() (populse_mia.user_interface.pipeline_manager.process_library.PackageLibraryDialog method) remove_progress() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) remove_raw_files_useless() (populse_mia.user_interface.main_window.MainWindow method) remove_row() (populse_mia.user_interface.data_browser.advanced_search.AdvancedSearch method) remove_scan() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) remove_switch_observer() (populse_mia.user_interface.pipeline_manager.process_mia.MIAProcessCompletionEngine method) remove_tag() (populse_mia.user_interface.data_browser.count_table.CountTable method) (populse_mia.user_interface.pipeline_manager.iteration_table.IterationTable method) (populse_mia.user_interface.pop_ups.PopUpMultipleSort method)

remove_tag_infos() (populse_mia.user_interface.data_browser.data_browser.DataBrowser method) remove_tag_pop_up() (populse_mia.user_interface.data_browser.data_browser.DataBrowser method) remove_value() (populse_mia.data_manager.database_mia.DatabaseMiaData method) removeChild() (populse_mia.user_interface.pipeline_manager.process_library.Node method) removeMesh() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) removeObject() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) removeRows() (populse_mia.user_interface.pipeline_manager.process_library.DictionaryTreeModel method) removeSavedProject() (populse_mia.data_manager.project_properties.SavedProjects method) removeVolume() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) rename_subprocesses() (populse_mia.user_interface.pipeline_manager.node_controller.CapsulNodeController method) (populse_mia.user_interface.pipeline_manager.node_controller.NodeController method) reput_values() (populse_mia.data_manager.project.Project method) requirements() (populse_mia.user_interface.pipeline_manager.process_mia.ProcessMIA method) reset_action() (populse_mia.user_interface.pipeline_manager.process_library.PackageLibraryDialog method) reset_cell() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) reset_column() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) reset_pipeline() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) reset_row() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) reset_search_bar() (populse_mia.user_interface.data_browser.data_browser.DataBrowser method) (populse_mia.user_interface.data_viewer.anatomist_2.mia_anatomist.MiaViewer method) (populse_mia.user_interface.pipeline_manager.node_controller.FilterWidget method) (populse_mia.user_interface.pipeline_manager.plug_filter.PlugFilter method) resize_table() (populse_mia.user_interface.pop_ups.DefaultValueListCreation method) resource() (populse_mia.user_interface.pipeline_manager.process_library.Node method) restart_Mia() (populse_mia.tests.run_mia_test.TestMIACase method) return_value() (populse_mia.user_interface.pop_ups.PopUpSaveProjectAs method) row() (populse_mia.user_interface.pipeline_manager.process_library.Node method) rowCount() (populse_mia.user_interface.pipeline_manager.process_library.DictionaryTreeModel method) rows_borders_added() (populse_mia.user_interface.data_browser.advanced_search.AdvancedSearch method) rows_borders_removed() (populse_mia.user_interface.data_browser.advanced_search.AdvancedSearch method) run() (populse_mia.data_manager.data_loader.ImportWorker method) (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.RunWorker method) run_process_mia() (populse_mia.user_interface.pipeline_manager.process_mia.ProcessMIA method) runPipeline() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) RunProgress (class in populse_mia.user_interface.pipeline_manager.pipeline_manager_tab) RunWorker (class in populse_mia.user_interface.pipeline_manager.pipeline_manager_tab)

S

safe_connect() (in module populse_mia.utils.utils) safe_disconnect() (in module populse_mia.utils.utils) save() (populse_mia.user_interface.main_window.MainWindow method) (populse_mia.user_interface.pipeline_manager.process_library.PackageLibraryDialog method) save_as() (populse_mia.user_interface.main_window.MainWindow method) save_as_clicked() (populse_mia.user_interface.pop_ups.PopUpClosePipeline method) (populse_mia.user_interface.pop_ups.PopUpQuit method) save_current_filter() (populse_mia.data_manager.project.Project method) save_full_config() (populse_mia.user_interface.pop_ups.PopUpPreferences method) save_minimal_config() (populse_mia.user_interface.pop_ups.PopUpPreferences method) save_path() (populse_mia.user_interface.pop_ups.PopUpAddPath method) save_pipeline() (in module populse_mia.user_interface.pipeline_manager.pipeline_editor) (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditor method) (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) save_pipeline_as() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) save_pipeline_parameters() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) save_project_as() (populse_mia.user_interface.main_window.MainWindow method) saveChoice() (populse_mia.user_interface.main_window.MainWindow method) saveConfig() (populse_mia.data_manager.project.Project method) (populse_mia.software_properties.Config method) SavedProjects (class in populse_mia.data_manager.project_properties) saveModifications() (populse_mia.data_manager.project.Project method) saveParameters() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) savePipeline() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) saveSavedProjects() (populse_mia.data_manager.project_properties.SavedProjects method) scans_added (populse_mia.data_manager.data_loader.ImportWorker property) schema() (populse_mia.data_manager.database_mia.DatabaseMIA method) screenshot() (populse_mia.user_interface.data_viewer.anatomist_2.mia_anatomist.MiaViewer method) search_str() (populse_mia.user_interface.data_browser.data_browser.DataBrowser method) (populse_mia.user_interface.data_viewer.anatomist_2.mia_anatomist.MiaViewer method) (populse_mia.user_interface.pipeline_manager.node_controller.FilterWidget method) (populse_mia.user_interface.pipeline_manager.plug_filter.PlugFilter method) (populse_mia.user_interface.pop_ups.PopUpCloneTag method) (populse_mia.user_interface.pop_ups.PopUpFilterSelection method) (populse_mia.user_interface.pop_ups.PopUpRemoveTag method) (populse_mia.user_interface.pop_ups.PopUpTagSelection method) (populse_mia.user_interface.pop_ups.PopUpVisualizedTags method) section_moved() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) see_all_projects() (populse_mia.user_interface.main_window.MainWindow method) select_all_column() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) select_all_columns() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) select_iteration_tag() (populse_mia.user_interface.pipeline_manager.iteration_table.IterationTable method) select_node() (populse_mia.user_interface.pop_ups.PopUpShowHistory method) select_tag() (populse_mia.user_interface.data_browser.count_table.CountTable method) (populse_mia.user_interface.pop_ups.PopUpMultipleSort method) select_visualized_tag() (populse_mia.user_interface.pipeline_manager.iteration_table.IterationTable method) selectedObjects() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) selection_changed() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) send_documents_to_pipeline() (populse_mia.user_interface.data_browser.data_browser.DataBrowser method) set_admin_hash() (populse_mia.software_properties.Config method) set_afni_path() (populse_mia.software_properties.Config method) set_ants_path() (populse_mia.software_properties.Config method) set_capsul_config() (populse_mia.software_properties.Config method) set_clinical_mode() (populse_mia.software_properties.Config method) set_controller_version() (populse_mia.user_interface.main_window.MainWindow method) set_current_editor_by_editor() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) set_current_editor_by_file_name() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) set_current_editor_by_tab_name() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) set_db_field_value() (in module populse_mia.utils.utils) set_documents() (populse_mia.user_interface.data_viewer.anatomist.mia_anatomist.MiaViewer method) (populse_mia.user_interface.data_viewer.anatomist_2.mia_anatomist.MiaViewer method) (populse_mia.user_interface.data_viewer.data_viewer.DataViewer method) (populse_mia.user_interface.data_viewer.data_viewer_tab.DataViewerTab method) set_filters_directory_as_default() (in module populse_mia.utils.utils) set_freesurfer_setup() (populse_mia.software_properties.Config method) set_fsl_config() (populse_mia.software_properties.Config method) set_item_data() (in module populse_mia.utils.utils) set_mainwindow_maximized() (populse_mia.software_properties.Config method) set_mainwindow_size() (populse_mia.software_properties.Config method) set_matlab_path() (populse_mia.software_properties.Config method) set_matlab_standalone_path() (populse_mia.software_properties.Config method) set_max_projects() (populse_mia.software_properties.Config method) set_max_thumbnails() (populse_mia.software_properties.Config method) set_module_view() (populse_mia.user_interface.pipeline_manager.process_library.PackageLibrary method) set_mri_conv_path() (populse_mia.software_properties.Config method) set_mrtrix_path() (populse_mia.software_properties.Config method)

set_opened_projects() (populse_mia.software_properties.Config method) set_plug_value() (populse_mia.user_interface.pipeline_manager.plug_filter.PlugFilter method) set_projects_directory_as_default() (in module populse_mia.utils.utils) set_projects_save_path() (populse_mia.software_properties.Config method) set_radioView() (populse_mia.software_properties.Config method) set_referential() (populse_mia.software_properties.Config method) set_resources_path() (populse_mia.software_properties.Config method) set_shown_tags() (populse_mia.data_manager.database_mia.DatabaseMiaData method) set_spm_path() (populse_mia.software_properties.Config method) set_spm_standalone_path() (populse_mia.software_properties.Config method) set_tab_index() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) set_use_afni() (populse_mia.software_properties.Config method) set_use_ants() (populse_mia.software_properties.Config method) set_use_freesurfer() (populse_mia.software_properties.Config method) set_use_fsl() (populse_mia.software_properties.Config method) set_use_matlab() (populse_mia.software_properties.Config method) set_use_matlab_standalone() (populse_mia.software_properties.Config method) set_use_mrtrix() (populse_mia.software_properties.Config method) set_use_spm() (populse_mia.software_properties.Config method) set_use_spm_standalone() (populse_mia.software_properties.Config method) set_user_mode() (populse_mia.software_properties.Config method) set_value() (populse_mia.data_manager.database_mia.DatabaseMiaData method) setAutoSave() (populse_mia.software_properties.Config method) setBackgroundColor() (populse_mia.software_properties.Config method) setChainCursors() (populse_mia.software_properties.Config method) setColorPalette() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) setComboBox() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) setControlV1() (populse_mia.software_properties.Config method) setCurrentFilter() (populse_mia.data_manager.project.Project method) setData() (populse_mia.user_interface.pipeline_manager.process_library.DictionaryTreeModel method) (populse_mia.user_interface.pipeline_manager.process_library.Node method) setDate() (populse_mia.data_manager.project.Project method) setName() (populse_mia.data_manager.project.Project method) setNbAllSlicesMax() (populse_mia.software_properties.Config method) setObject() (populse_mia.user_interface.data_viewer.anatomist_2.snd_window.NewWindowViewer method) setShowAllSlices() (populse_mia.software_properties.Config method) setSlider() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) setSortedTag() (populse_mia.data_manager.project.Project method) setSortOrder() (populse_mia.data_manager.project.Project method) setSourceImageDir() (populse_mia.software_properties.Config method) setTextColor() (populse_mia.software_properties.Config method) setThumbnail() (populse_mia.user_interface.data_browser.mini_viewer.MiniViewer method) setThumbnailTag() (populse_mia.software_properties.Config method) setUp() (populse_mia.tests.run_mia_test.TestMIACase method) setup_anatomist() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) setup_color_palette_and_slider() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) setup_gui_connections() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) setup_menu_actions() (populse_mia.user_interface.main_window.MainWindow method) setup_ui() (populse_mia.user_interface.pop_ups.PopUpPreferences method) (populse_mia.user_interface.pop_ups.PopUpShowHistory method) setup_window_size() (populse_mia.user_interface.main_window.MainWindow method) setUpClass() (populse_mia.tests.run_mia_test.TestMIACase class method) setViewerConfig() (populse_mia.software_properties.Config method) setViewerFramerate() (populse_mia.software_properties.Config method) show_brick_history() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) show_clone_tag_popup() (populse_mia.user_interface.data_browser.data_browser.DataBrowser method) show_error_message() (populse_mia.user_interface.pop_ups.PopUpPreferences method) show_search() (populse_mia.user_interface.data_browser.advanced_search.AdvancedSearch method) show_slices() (populse_mia.user_interface.data_browser.mini_viewer.MiniViewer method) show_status() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) show_warning_message() (populse_mia.user_interface.pop_ups.PopUpPreferences method) showPopup() (populse_mia.user_interface.data_viewer.anatomist_2.snd_window.NewWindowViewer method) software_preferences_pop_up() (populse_mia.user_interface.main_window.MainWindow method) sort_column() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) sort_scans() (populse_mia.user_interface.pop_ups.PopUpMultipleSort method) sort_updated() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) start() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.RunProgress method) startVolumeRendering() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) static_release() (populse_mia.user_interface.pipeline_manager.node_controller.CapsulNodeController static method) StatusWidget (class in populse_mia.user_interface.pipeline_manager.pipeline_manager_tab) stop_execution() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.RunProgress method) stopVolumeRendering() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) STYLED_UNDEFINED_TEXT (populse_mia.user_interface.pipeline_manager.type_editors.PopulseUndefinedControlWidget attribute) suppress_all_output() (populse_mia.tests.run_mia_test.TestMIACase method) suppress_item_changed_signal() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) switch_project() (populse_mia.user_interface.main_window.MainWindow method)

T

tab_changed() (populse_mia.user_interface.main_window.MainWindow method) table_to_database() (in module populse_mia.utils.utils) TableDataBrowser (class in populse_mia.user_interface.data_browser.data_browser) TAG_BRICKS (in module populse_mia.data_manager) TAG_CHECKSUM (in module populse_mia.data_manager) TAG_EXP_TYPE (in module populse_mia.data_manager) TAG_FILENAME (in module populse_mia.data_manager) TAG_HISTORY (in module populse_mia.data_manager) TAG_ORIGIN_BUILTIN (in module populse_mia.data_manager) TAG_ORIGIN_USER (in module populse_mia.data_manager) TAG_TYPE (in module populse_mia.data_manager) TAG_UNIT_DEGREE (in module populse_mia.data_manager) TAG_UNIT_HZPIXEL (in module populse_mia.data_manager) TAG_UNIT_MHZ (in module populse_mia.data_manager) TAG_UNIT_MM (in module populse_mia.data_manager) TAG_UNIT_MS (in module populse_mia.data_manager) tags_from_file() (in module populse_mia.data_manager.data_loader) tags_inheritance() (populse_mia.user_interface.pipeline_manager.process_mia.ProcessMIA method) tearDown() (populse_mia.tests.run_mia_test.TestMIACase method) tearDownClass() (populse_mia.tests.run_mia_test.TestMIACase class method) test_add_path() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_add_plug_value_to_database_list_type() (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab method) test_add_plug_value_to_database_non_list_type() (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab method) test_add_plug_value_to_database_several_inputs() (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab method) test_add_tab() (populse_mia.tests.run_mia_test.TestMIAPipelineEditor method) test_add_tag() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_advanced_search() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_ask_iterated_pipeline_plugs() (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab method) test_attributes_filter() (populse_mia.tests.run_mia_test.TestMIANodeController method) test_brick_history() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_build_iterated_pipeline() (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab method) test_capsul_node_controller() (populse_mia.tests.run_mia_test.TestMIANodeController method) test_check_database() (populse_mia.tests.run_mia_test.TestMIAMainWindow method) test_check_requirements() (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab method) test_check_setup() (populse_mia.tests.run_mia_test.Test_Z_MIAOthers method) test_cleanup_older_init() (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab method) test_clear_cell() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_clone_tag() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_close_tab() (populse_mia.tests.run_mia_test.TestMIAPipelineEditor method) test_complete_pipeline_parameters() (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab method) test_count_table() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_create_project_pop_up() (populse_mia.tests.run_mia_test.TestMIAMainWindow method) test_delete_processes() (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab method) test_display_filter() (populse_mia.tests.run_mia_test.TestMIANodeController method) test_drop_process() (populse_mia.tests.run_mia_test.TestMIAPipelineEditor method) test_end_progress() (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab method) test_export_plug() (populse_mia.tests.run_mia_test.TestMIAPipelineEditor method) test_files_in_project() (populse_mia.tests.run_mia_test.TestMIAMainWindow method) test_filter_widget() (populse_mia.tests.run_mia_test.TestMIANodeController method) test_garbage_collect() (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab method) test_get_capsul_engine() (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab method) test_get_missing_mandatory_parameters() (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab method) test_get_pipeline_or_process() (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab method) test_import_data() (populse_mia.tests.run_mia_test.TestMIAMainWindow method) test_initialize() (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab method) test_iteration_table() (populse_mia.tests.run_mia_test.Test_Z_MIAOthers method) test_mia_preferences() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_mini_viewer() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_modify_table() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_multiple_sort() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_multiple_sort_appendix() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_node_controller() (populse_mia.tests.run_mia_test.TestMIANodeController method) test_open_project() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_open_project_pop_up() (populse_mia.tests.run_mia_test.TestMIAMainWindow method) test_open_recent_project() (populse_mia.tests.run_mia_test.TestMIAMainWindow method) test_openTagsPopUp() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_package_library_dialog_add_pkg() (populse_mia.tests.run_mia_test.TestMIAMainWindow method) test_package_library_dialog_del_pkg() (populse_mia.tests.run_mia_test.TestMIAMainWindow method) test_package_library_dialog_rmv_pkg() (populse_mia.tests.run_mia_test.TestMIAMainWindow method) test_package_library_others() (populse_mia.tests.run_mia_test.TestMIAMainWindow method) test_plug_filter() (populse_mia.tests.run_mia_test.TestMIANodeController method) test_popUpDeletedProject() (populse_mia.tests.run_mia_test.TestMIAMainWindow method) test_popUpDeleteProject() (populse_mia.tests.run_mia_test.TestMIAMainWindow method) test_process_library() (populse_mia.tests.run_mia_test.Test_Z_MIAOthers method) test_proj_remov_from_cur_proj() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_project_filter() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_project_properties() (populse_mia.tests.run_mia_test.TestMIADataBrowser method)

test_rapid_search() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_register_completion_attributes() (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab method) test_register_node_io_in_database() (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab method) test_remove_progress() (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab method) test_remove_scan() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_remove_tag() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_reset_cell() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_reset_column() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_reset_row() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_run() (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab method) test_save_pipeline() (populse_mia.tests.run_mia_test.TestMIAPipelineEditor method) test_save_pipeline_as() (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab method) test_save_project() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_savePipeline() (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab method) test_see_all_projects() (populse_mia.tests.run_mia_test.TestMIAMainWindow method) test_send_doc_to_pipeline_manager() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_set_anim_frame() (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab method) test_set_value() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_show_brick_history() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_show_status() (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab method) test_software_preferences_pop_up() (populse_mia.tests.run_mia_test.TestMIAMainWindow method) test_software_preferences_pop_up_config_file() (populse_mia.tests.run_mia_test.TestMIAMainWindow method) test_software_preferences_pop_up_modules_config() (populse_mia.tests.run_mia_test.TestMIAMainWindow method) test_software_preferences_pop_up_validate() (populse_mia.tests.run_mia_test.TestMIAMainWindow method) test_sort() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_stop_execution() (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab method) test_switch_project() (populse_mia.tests.run_mia_test.TestMIAMainWindow method) test_tab_changed() (populse_mia.tests.run_mia_test.TestMIAMainWindow method) test_table_data_add_columns() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_table_data_appendix() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_table_data_context_menu() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_undo_redo() (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab method) test_undo_redo_databrowser() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_unnamed_proj_soft_open() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_update_auto_inheritance() (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab method) test_update_default_value() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_update_inheritance() (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab method) test_update_node_list() (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab method) test_update_node_name() (populse_mia.tests.run_mia_test.TestMIANodeController method) test_update_plug_value() (populse_mia.tests.run_mia_test.TestMIAPipelineEditor method) test_utils() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_verify_processes() (populse_mia.tests.run_mia_test.Test_Z_MIAOthers method) test_visualized_tags() (populse_mia.tests.run_mia_test.TestMIADataBrowser method) test_z_check_modif() (populse_mia.tests.run_mia_test.TestMIAPipelineEditor method) test_z_get_editor() (populse_mia.tests.run_mia_test.TestMIAPipelineEditor method) test_z_get_filename() (populse_mia.tests.run_mia_test.TestMIAPipelineEditor method) test_z_get_index() (populse_mia.tests.run_mia_test.TestMIAPipelineEditor method) test_z_get_tab_name() (populse_mia.tests.run_mia_test.TestMIAPipelineEditor method) test_z_init_pipeline() (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab method) test_z_load_pipeline() (populse_mia.tests.run_mia_test.TestMIAPipelineEditor method) Test_Z_MIAOthers (class in populse_mia.tests.run_mia_test) test_z_open_shell() (populse_mia.tests.run_mia_test.Test_Z_MIAOthers method) test_z_open_sub_pipeline() (populse_mia.tests.run_mia_test.TestMIAPipelineEditor method) test_z_runPipeline() (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab method) test_z_set_current_editor() (populse_mia.tests.run_mia_test.TestMIAPipelineEditor method) test_zz_del_pack() (populse_mia.tests.run_mia_test.TestMIAPipelineEditor method) (populse_mia.tests.run_mia_test.TestMIAPipelineManagerTab method) TestMIACase (class in populse_mia.tests.run_mia_test) TestMIADataBrowser (class in populse_mia.tests.run_mia_test) TestMIAMainWindow (class in populse_mia.tests.run_mia_test) TestMIANodeController (class in populse_mia.tests.run_mia_test) TestMIAPipelineEditor (class in populse_mia.tests.run_mia_test) TestMIAPipelineManagerTab (class in populse_mia.tests.run_mia_test) TimeFormatDelegate (class in populse_mia.user_interface.data_browser.data_browser) to_dict() (populse_mia.user_interface.pipeline_manager.process_library.DictionaryTreeModel method) (populse_mia.user_interface.pipeline_manager.process_library.Node method) (populse_mia.user_interface.pipeline_manager.process_library.ProcessLibrary method) to_list() (populse_mia.user_interface.pipeline_manager.process_library.Node method) toggle_advanced_search() (populse_mia.user_interface.data_browser.data_browser.DataBrowser method) toggle_soma_workflow() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.StatusWidget method) TYPE_BVAL (in module populse_mia.data_manager) TYPE_BVEC (in module populse_mia.data_manager) TYPE_BVEC_BVAL (in module populse_mia.data_manager) TYPE_MAT (in module populse_mia.data_manager) type_name() (in module populse_mia.utils.utils) TYPE_NII (in module populse_mia.data_manager) TYPE_TXT (in module populse_mia.data_manager) TYPE_UNKNOWN (in module populse_mia.data_manager)

U

UNDEFINED_TEXT (populse_mia.user_interface.pipeline_manager.type_editors.PopulseUndefinedControlWidget attribute) undo() (populse_mia.data_manager.project.Project method) (populse_mia.user_interface.main_window.MainWindow method) (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) unsavedModifications (populse_mia.data_manager.project.Project property) unsaveModifications() (populse_mia.data_manager.project.Project method) update_attributes_from_filter() (populse_mia.user_interface.pipeline_manager.node_controller.CapsulNodeController method) update_auto_inheritance() (in module populse_mia.utils.utils) update_capsul_config() (populse_mia.software_properties.Config method) update_checks() (populse_mia.user_interface.pipeline_manager.process_library.PackageLibrary method) update_colors() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) update_config() (populse_mia.user_interface.pipeline_manager.process_library.PackageLibraryDialog method) (populse_mia.user_interface.pipeline_manager.process_library.ProcessLibraryWidget method) update_controller() (populse_mia.user_interface.pipeline_manager.type_editors.PopulseUndefinedControlWidget static method) update_controller_widget() (populse_mia.user_interface.pipeline_manager.type_editors.PopulseUndefinedControlWidget static method) update_current_node() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) update_database() (populse_mia.user_interface.data_browser.data_browser.DataBrowser method) update_db_for_paths() (populse_mia.data_manager.project.Project method) update_default_value() (populse_mia.user_interface.pop_ups.DefaultValueListCreation method) update_field_attributes() (populse_mia.data_manager.database_mia.DatabaseMiaSchema method) update_gui_from_capsul_config() (populse_mia.user_interface.pop_ups.PopUpPreferences method) update_history() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditor method) (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) update_inheritance() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) update_iterated_tag() (populse_mia.user_interface.pipeline_manager.iteration_table.IterationTable method) update_iteration_checkbox() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) update_nb_slices() (populse_mia.user_interface.data_browser.mini_viewer.MiniViewer method) update_node_list() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) update_node_name() (populse_mia.user_interface.pipeline_manager.node_controller.CapsulNodeController method) (populse_mia.user_interface.pipeline_manager.node_controller.NodeController method) (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditor method) update_parameters() (populse_mia.user_interface.pipeline_manager.node_controller.CapsulNodeController method) (populse_mia.user_interface.pipeline_manager.node_controller.NodeController method) update_pipeline_editors() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) update_plug_value() (populse_mia.user_interface.pipeline_manager.node_controller.NodeController method) (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditor method) update_plug_value_from_filter() (populse_mia.user_interface.pipeline_manager.node_controller.NodeController method) (populse_mia.user_interface.pipeline_manager.type_editors.PopulseDirectoryControlWidget static method) (populse_mia.user_interface.pipeline_manager.type_editors.PopulseFileControlWidget static method) (populse_mia.user_interface.pipeline_manager.type_editors.PopulseOffscreenListFileControlWidget static method)

update_process_library() (populse_mia.user_interface.pipeline_manager.process_library.ProcessLibraryWidget method) update_project() (populse_mia.user_interface.main_window.MainWindow method) (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) update_recent_projects_actions() (populse_mia.user_interface.main_window.MainWindow method) update_scans_list() (populse_mia.user_interface.pipeline_manager.pipeline_editor.PipelineEditorTabs method) (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) update_selected_tag() (populse_mia.user_interface.pipeline_manager.iteration_table.IterationTable method) update_selection() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) update_table() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) (populse_mia.user_interface.pipeline_manager.iteration_table.IterationTable method) (populse_mia.user_interface.pop_ups.PopUpShowHistory method) update_table_for_single_brick() (populse_mia.user_interface.pop_ups.PopUpShowHistory method) update_table_for_subpipeline() (populse_mia.user_interface.pop_ups.PopUpShowHistory method) update_table_values() (populse_mia.user_interface.data_browser.modify_table.ModifyTable method) update_table_with_brick_data() (populse_mia.user_interface.pop_ups.PopUpShowHistory method) update_tag_to_filter() (populse_mia.user_interface.pipeline_manager.node_controller.FilterWidget method) (populse_mia.user_interface.pipeline_manager.plug_filter.PlugFilter method) update_tags() (populse_mia.user_interface.pipeline_manager.node_controller.FilterWidget method) (populse_mia.user_interface.pipeline_manager.plug_filter.PlugFilter method) update_user_buttons_states() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) update_user_mode() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) update_visualization() (populse_mia.user_interface.data_browser.mini_viewer.MiniViewer method) update_visualized_columns() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) update_visualized_rows() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) updateProcessLibrary() (populse_mia.user_interface.pipeline_manager.pipeline_manager_tab.PipelineManagerTab method) updateRendering() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) updateVolumeValues() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) use_afni_changed() (populse_mia.user_interface.pop_ups.PopUpPreferences method) use_ants_changed() (populse_mia.user_interface.pop_ups.PopUpPreferences method) use_current_mainwindow_size() (populse_mia.user_interface.pop_ups.PopUpPreferences method) use_freesurfer_changed() (populse_mia.user_interface.pop_ups.PopUpPreferences method) use_fsl_changed() (populse_mia.user_interface.pop_ups.PopUpPreferences method) use_matlab_changed() (populse_mia.user_interface.pop_ups.PopUpPreferences method) use_matlab_standalone_changed() (populse_mia.user_interface.pop_ups.PopUpPreferences method) use_mrtrix_changed() (populse_mia.user_interface.pop_ups.PopUpPreferences method) use_spm_changed() (populse_mia.user_interface.pop_ups.PopUpPreferences method) use_spm_standalone_changed() (populse_mia.user_interface.pop_ups.PopUpPreferences method)

V

VALID_REPRESENTATIONS (populse_mia.user_interface.pipeline_manager.type_editors.PopulseUndefinedControlWidget attribute) validate_and_save() (populse_mia.user_interface.pop_ups.PopUpPreferences method) validate_matlab_path() (populse_mia.user_interface.pop_ups.PopUpPreferences method) validate_matlab_standalone_path() (populse_mia.user_interface.pop_ups.PopUpPreferences method) validate_paths() (populse_mia.user_interface.pop_ups.PopUpPreferences method) validate_spm_path() (populse_mia.user_interface.pop_ups.PopUpPreferences method) validate_spm_standalone_path() (populse_mia.user_interface.pop_ups.PopUpPreferences method) validate_tool_path() (populse_mia.user_interface.pop_ups.PopUpPreferences method)

value (populse_mia.user_interface.pipeline_manager.process_library.Node property) verCmp() (in module populse_mia.utils.utils) verify_processes() (in module populse_mia.utils.utils) verify_scans() (in module populse_mia.data_manager.data_loader) verify_setup() (in module populse_mia.utils.utils) verify_slices() (populse_mia.user_interface.data_browser.mini_viewer.MiniViewer method) viewReferential() (populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2.AnaSimpleViewer2 method) visualized_tags_pop_up() (populse_mia.user_interface.data_browser.data_browser.TableDataBrowser method) VolRenderControl (class in populse_mia.user_interface.data_viewer.anatomist_2.anasimpleviewer2)

W

wrong_path() (populse_mia.user_interface.pop_ups.PopUpPreferences method)

Y

yes_all_clicked() (populse_mia.user_interface.pop_ups.PopUpRemoveScan method)

yes_clicked() (populse_mia.user_interface.pop_ups.PopUpRemoveScan method)