Index

_

_clone_trait() (soma.controller.controller.Controller method)

A

actions (soma.qt_gui.qtThread.QtThreadCall attribute) add() (soma.notification.EditableTree method) (soma.notification.EditableTree.Branch method) (soma.notification.Notifier method) (soma.notification.ObservableNotifier method) (soma.notification.VariableParametersNotifier method) add_trait() (soma.controller.controller.Controller method), [1] addHandlerRules() (soma.importer.ExtendedModule method) addListener() (soma.notification.ObservableList method) (soma.notification.ObservableSortedDictionary method)

addListenerRec() (soma.notification.EditableTree method) (soma.notification.EditableTree.Branch method) addPartialRules() (soma.importer.ExtendedModule method) allocate_workers() (in module soma.mpfork) allowed_extensions_for_parameter() (soma.fom.AttributesToPaths method) append() (soma.notification.ObservableList method) Application (class in soma.application) applyRules() (soma.importer.ExtendedImporter method) (soma.importer.ExtendedModule method) AttributesToPaths (class in soma.fom)

B

BRAINVISA_SHARE (in module soma.config)

BufferAndFile (class in soma.bufferandfile)

C

call() (soma.qt_gui.qtThread.QtThreadCall method) (soma.thread_calls.SingleThreadCalls method) change_file() (soma.bufferandfile.BufferAndFile method) checked_trait() (soma.controller.controller.Controller static method) checkParameterCount() (in module soma.utils.functiontools) ClassFactory (class in soma.factory) cleanup() (in module soma.utils.loader) clear() (soma.notification.ObservableSortedDictionary method) (soma.sorted_dictionary.SortedDictionary method) clone() (soma.bufferandfile.BufferAndFile method) close() (soma.qt_gui.io.Socket method) (soma.qt_gui.timered_widgets.TimeredQLineEdit method) (soma.sqlite_tools.ThreadSafeSQLiteConnection method) close_connections() (soma.sqlite_tools.ThreadSafeSQLiteConnection method) closeSqliteConnections() (soma.sqlite_tools.ThreadSafeSQLiteConnection method)

compItems() (soma.notification.EditableTree method) (soma.notification.EditableTree.Branch method) compValues() (soma.sorted_dictionary.SortedDictionary method) connect() (soma.qt_gui.controller_widget.ControllerWidget method) Controller (class in soma.controller.controller) controller_to_dict() (in module soma.controller.controller) ControllerTrait (class in soma.controller.controller) ControllerWidget (class in soma.qt_gui.controller_widget) copy() (soma.controller.controller.Controller method) (soma.sorted_dictionary.SortedDictionary method) copyEnabled (soma.notification.EditableTree.Item attribute) create_control() (soma.qt_gui.controller_widget.ControllerWidget method) create_logger() (in module soma.logging) createMinfWriter() (in module soma.minf.api) currentThreadCleanup() (soma.sqlite_tools.ThreadSafeSQLiteConnection method)

D

decrypt_RSA() (in module soma.crypt) deep_update() (in module soma.fom) default() (soma.controller.controller.JsonControllerEncoder method) defaultName (soma.notification.EditableTree attribute) defaultPort (soma.qt_gui.io.Socket attribute) delayAttributeNotification() (soma.notification.ObservableAttributes method) delayNotification() (soma.notification.Notifier method) delEnabled (soma.notification.EditableTree.Item attribute)

DeletableLineEdit (class in soma.qt_gui.controller_widget) delete_connection() (soma.sqlite_tools.ThreadSafeSQLiteConnection method) dest (soma.qt_gui.io.Socket attribute) disableHandler() (soma.qt_gui.io.Socket method) disconnect() (soma.qt_gui.controller_widget.ControllerWidget method) doAction() (soma.qt_gui.qtThread.QtThreadCall method) drange() (in module soma.utils.functiontools) drawValues() (soma.qt_gui.rangeSlider.QRangeSlider method)

E

EditableTree (class in soma.notification) EditableTree.Branch (class in soma.notification) EditableTree.Item (class in soma.notification) EditableTree.Leaf (class in soma.notification) enabled (soma.notification.EditableTree.Item attribute) enableHandler() (soma.qt_gui.io.Socket method) encrypt_RSA() (in module soma.crypt) end() (soma.qt_gui.rangeSlider.QRangeSlider method)

ensure_is_dir() (in module soma.path) event() (soma.qt_gui.qtThread.QtThreadCall method) execfile() (in module soma.importer) export_to_dict() (soma.controller.controller.Controller method) extend() (soma.notification.ObservableList method) ExtendedImporter (class in soma.importer) ExtendedImporterHelper (class in soma.importer) ExtendedModule (class in soma.importer)

F

FakeQtThreadCall (class in soma.qt_gui.qtThread) FileOrganizationModelManager (class in soma.fom) find_class() (soma.factory.ClassFactory method) find_factory() (in module soma.serialization) find_foms() (soma.fom.FileOrganizationModelManager method) find_in_path() (in module soma.path) find_items_in_module() (in module soma.factory) find_library() (in module soma.utils.find_library)

find_subclasses_in_module() (in module soma.factory) findFreePort() (soma.qt_gui.io.Socket method) findPlatform() (in module soma.qt_gui.io) fom_files() (soma.fom.FileOrganizationModelManager method) from_json() (in module soma.serialization) full_version (in module soma.config) fullVersion (in module soma.config) func_code() (soma.utils.functiontools.SomaPartial property) function_call_info() (in module soma.debug)

G

generate_RSA() (in module soma.crypt) GenericHandlers (class in soma.importer) get() (soma.factory.ClassFactory method) get_class() (soma.factory.ClassFactory method) get_connection() (soma.sqlite_tools.ThreadSafeSQLiteConnection method) get_control_class() (soma.qt_gui.controller_widget.ControllerWidget method) get_name() (in module soma.global_naming) (soma.global_naming.GlobalNaming method) get_object() (in module soma.global_naming) (soma.global_naming.GlobalNaming method) get_qt_backend() (in module soma.qt_gui.qt_backend) get_qt_module() (in module soma.qt_gui.qt_backend)

get_ref() (in module soma.utils.weak_proxy) getArgumentsSpecification() (in module soma.utils.functiontools) getCallableString() (in module soma.utils.functiontools) getExistingDirectory() (in module soma.qt_gui.qt_backend) getIndexInRange() (soma.notification.ObservableList method) getMessage() (soma.qt_gui.io.Socket method) getModuleObject() (soma.importer.ExtendedImporterHelper static method) getOpenFileName() (in module soma.qt_gui.qt_backend) getPositiveIndex() (soma.notification.ObservableList method) getRange() (soma.qt_gui.rangeSlider.QRangeSlider method) getSaveFileName() (in module soma.qt_gui.qt_backend) GlobalNaming (class in soma.global_naming) gray2qimage() (in module soma.qimage2ndarray)

H

hasParameter() (in module soma.utils.functiontools)

htmlEscape() (in module soma.html)

I

icon (soma.notification.EditableTree.Item attribute) id (soma.notification.EditableTree attribute) import_from_dict() (soma.controller.controller.Controller method) import_qt_submodule() (in module soma.qt_gui.qt_backend) importInModule() (soma.importer.ExtendedImporter method) imshow_widget() (in module soma.qt_gui.qt_backend) index() (soma.sorted_dictionary.SortedDictionary method) init_matplotlib_backend() (in module soma.qt_gui.qt_backend) init_traitsui_handler() (in module soma.qt_gui.qt_backend) initialize() (soma.application.Application method) (soma.qt_gui.io.Socket method) initialized (soma.qt_gui.io.Socket attribute) inner_traits() (soma.controller.controller.ControllerTrait method) insert() (soma.notification.ObservableList method) (soma.notification.ObservableSortedDictionary method) (soma.sorted_dictionary.SortedDictionary method) INSERT_ACTION (soma.notification.ObservableList attribute) (soma.notification.ObservableSortedDictionary attribute)

insert_tool() (in module soma.utils.loader) is_archive() (in module soma.archive) is_parameter_protected() (soma.controller.controller.Controller method) is_user_trait() (soma.controller.controller.Controller method), [1] is_valid() (soma.qt_gui.controller_widget.ControllerWidget method) isActive() (soma.qt_gui.timered_widgets.QLineEditModificationTimer method) isDescendant() (soma.notification.EditableTree method) (soma.notification.EditableTree.Item method) isInMainThread() (soma.qt_gui.qtThread.QtThreadCall method) isLeaf() (soma.notification.EditableTree.Branch method) (soma.notification.EditableTree.Item method) (soma.notification.EditableTree.Leaf method) itemIndex() (soma.notification.ObservableList method) items() (soma.sorted_dictionary.SortedDictionary method) iterateMinf() (in module soma.minf.api) iteritems() (soma.sorted_dictionary.SortedDictionary method) iterkeys() (soma.sorted_dictionary.SortedDictionary method) itervalues() (soma.sorted_dictionary.SortedDictionary method)

J

json_reader (class in soma.fom) JsonControllerDecoder (class in soma.controller.controller)

JsonControllerEncoder (class in soma.controller.controller) JSONSerializable (class in soma.serialization)

K

keyPressEvent() (soma.qt_gui.rangeSlider.QRangeSlider method)

keys() (soma.sorted_dictionary.SortedDictionary method)

L

lesserHtmlEscape() (in module soma.html) list_to_string() (in module soma.stringtools) load_objects() (in module soma.utils.loader) load_plugin_module() (soma.application.Application static method) loadUi() (in module soma.qt_gui.qt_backend)

loadUiType() (in module soma.qt_gui.qt_backend) locate_file() (in module soma.path) lock (soma.qt_gui.io.Socket attribute) (soma.qt_gui.qtThread.QtThreadCall attribute) loopRetry (soma.qt_gui.io.Socket attribute)

M

mainThread (soma.qt_gui.qtThread.QtThreadCall attribute) MainThreadLife (class in soma.qt_gui.qtThread) makedirs() (in module soma.safemkdir) max() (soma.qt_gui.rangeSlider.QRangeSlider method) messageHandler() (soma.qt_gui.io.Socket method) min() (soma.qt_gui.rangeSlider.QRangeSlider method) minfFormat() (in module soma.minf.api) mkdir() (in module soma.safemkdir) modifiable (soma.notification.EditableTree attribute) (soma.notification.EditableTree.Item attribute) MODIFY_ACTION (soma.notification.ObservableList attribute) (soma.notification.ObservableSortedDictionary attribute) module soma.activate_virtualenv soma.api soma.application soma.archive soma.bufferandfile soma.config soma.controller soma.controller.controller soma.crypt soma.debug soma.factory soma.fom soma.global_naming soma.html soma.importer soma.info soma.logging soma.minf.api soma.mpfork soma.notification soma.path soma.qimage2ndarray soma.qt_gui soma.qt_gui.controller_widget soma.qt_gui.io soma.qt_gui.qt_backend soma.qt_gui.qtThread soma.qt_gui.rangeSlider soma.qt_gui.timered_widgets soma.safemkdir soma.serialization soma.singleton soma.somatime soma.sorted_dictionary soma.sqlite_tools soma.stringtools soma.thread_calls soma.translation soma.undefined soma.utils soma.utils.find_library soma.utils.functiontools soma.utils.loader soma.utils.weak_proxy soma.uuid

movable (soma.notification.EditableTree.Item attribute) moveChildren() (soma.importer.GenericHandlers static method)

N

name (soma.notification.EditableTree attribute) (soma.notification.EditableTree.Item attribute) next() (soma.bufferandfile.BufferAndFile method) Notifier (class in soma.notification)

notify() (soma.notification.Notifier method) notifyAttributeChange() (soma.notification.ObservableAttributes method) notifyenabled (soma.qt_gui.io.Socket attribute) numberOfParameterRange() (in module soma.utils.functiontools)

O

ObservableAttributes (class in soma.notification) ObservableList (class in soma.notification) ObservableNotifier (class in soma.notification) ObservableSortedDictionary (class in soma.notification) onAddFirstListener (soma.notification.ObservableNotifier attribute) onAttributeChange() (soma.notification.ObservableAttributes method)

onAttributeChangeRec() (soma.notification.EditableTree method) (soma.notification.EditableTree.Branch method) onChangeNotifier (soma.notification.ObservableList attribute) (soma.notification.ObservableSortedDictionary attribute) onRemoveLastListener (soma.notification.ObservableNotifier attribute) open() (soma.bufferandfile.BufferAndFile static method) OpenKeyController (class in soma.controller.controller)

P

pack() (in module soma.archive) pack_tar() (in module soma.archive) pack_zip() (in module soma.archive) parse_global_name() (soma.global_naming.GlobalNaming method) parse_query_string() (in module soma.path) patch_ctypes_find_library() (in module soma.utils.find_library) path_hash() (in module soma.path) PathToAttributes (class in soma.fom) pop() (soma.notification.ObservableList method) (soma.sorted_dictionary.SortedDictionary method)

popitem() (soma.sorted_dictionary.SortedDictionary method) port (soma.qt_gui.io.Socket attribute) print_stack() (in module soma.debug) processFunctions() (soma.thread_calls.SingleThreadCalls method) processingLoop() (soma.thread_calls.SingleThreadCalls method) processMessage() (soma.qt_gui.io.Socket method) protect_parameter() (soma.controller.controller.Controller method) push() (soma.qt_gui.qtThread.QtThreadCall method) (soma.thread_calls.SingleThreadCalls method)

Q

qimage2numpy() (in module soma.qimage2ndarray) qimage_to_np() (in module soma.qt_gui.qt_backend) QLineEditModificationTimer (class in soma.qt_gui.timered_widgets)

QRangeSlider (class in soma.qt_gui.rangeSlider) QtThreadCall (class in soma.qt_gui.qtThread) quote_string() (in module soma.stringtools)

R

read() (soma.bufferandfile.BufferAndFile method) read_json() (in module soma.fom) readForever() (soma.qt_gui.io.Socket method) readline() (soma.bufferandfile.BufferAndFile method) readLine() (soma.qt_gui.io.Socket method) readLock (soma.qt_gui.io.Socket attribute) readMessage() (soma.qt_gui.io.Socket method) readMinf() (in module soma.minf.api) ref() (soma.qt_gui.qtThread.MainThreadLife method) relative_path() (in module soma.path) remove() (soma.notification.Notifier method) (soma.notification.ObservableList method) (soma.notification.ObservableNotifier method) (soma.notification.VariableParametersNotifier method)

REMOVE_ACTION (soma.notification.ObservableList attribute) (soma.notification.ObservableSortedDictionary attribute) remove_query_string() (in module soma.path) remove_trait() (soma.controller.controller.Controller method), [1] removeChildren() (soma.importer.GenericHandlers static method) removeEmptyBranches() (soma.notification.EditableTree method) (soma.notification.EditableTree.Branch method) removeOnAttributeChange() (soma.notification.ObservableAttributes method) reorder_traits() (soma.controller.controller.Controller method) ReorderedCall (class in soma.notification) restartAttributeNotification() (soma.notification.ObservableAttributes method) restartNotification() (soma.notification.Notifier method) reverse() (soma.notification.ObservableList method) rgb2qimage() (in module soma.qimage2ndarray) run_job() (in module soma.mpfork)

S

ScrollControllerWidget (class in soma.qt_gui.controller_widget) seek() (soma.bufferandfile.BufferAndFile method) send() (soma.qt_gui.io.Socket method) set_qt_backend() (in module soma.qt_gui.qt_backend) setAllModificationsEnabled() (soma.notification.EditableTree.Item method) setBackgroundStyle() (soma.qt_gui.rangeSlider.QRangeSlider method) setdefault() (soma.sorted_dictionary.SortedDictionary method) setDrawValues() (soma.qt_gui.rangeSlider.QRangeSlider method) setEnd() (soma.qt_gui.rangeSlider.QRangeSlider method) setMax() (soma.qt_gui.rangeSlider.QRangeSlider method) setMin() (soma.qt_gui.rangeSlider.QRangeSlider method) setProcessingThread() (soma.thread_calls.SingleThreadCalls method) setRange() (soma.qt_gui.rangeSlider.QRangeSlider method) setSpanStyle() (soma.qt_gui.rangeSlider.QRangeSlider method) setStart() (soma.qt_gui.rangeSlider.QRangeSlider method) short_version (in module soma.config) shortVersion (in module soma.config) SingleThreadCalls (class in soma.thread_calls) Singleton (class in soma.singleton) Socket (class in soma.qt_gui.io) socket (soma.qt_gui.io.Socket attribute) socketnotifier (soma.qt_gui.io.Socket attribute) soma.activate_virtualenv module soma.api module soma.application module soma.archive module soma.bufferandfile module soma.config module soma.controller module soma.controller.controller module soma.crypt module soma.debug module soma.factory module soma.fom module soma.global_naming module soma.html module soma.importer module soma.info module soma.logging module soma.minf.api module soma.mpfork module soma.notification module soma.path module soma.qimage2ndarray module

soma.qt_gui module soma.qt_gui.controller_widget module soma.qt_gui.io module soma.qt_gui.qt_backend module soma.qt_gui.qtThread module soma.qt_gui.rangeSlider module soma.qt_gui.timered_widgets module soma.safemkdir module soma.serialization module soma.singleton module soma.somatime module soma.sorted_dictionary module soma.sqlite_tools module soma.stringtools module soma.thread_calls module soma.translation module soma.undefined module soma.utils module soma.utils.find_library module soma.utils.functiontools module soma.utils.loader module soma.utils.weak_proxy module soma.uuid module SomaPartial (class in soma.utils.functiontools) sort() (soma.notification.EditableTree method) (soma.notification.EditableTree.Branch method) (soma.notification.ObservableList method) (soma.notification.ObservableSortedDictionary method) (soma.sorted_dictionary.SortedDictionary method) SortedDictionary (class in soma.sorted_dictionary) split_path() (in module soma.path) split_query_string() (in module soma.path) stack_calls_info() (in module soma.debug) start() (soma.qt_gui.rangeSlider.QRangeSlider method) startInternalModification() (soma.qt_gui.timered_widgets.QLineEditModificationTimer method) (soma.qt_gui.timered_widgets.TimeredQLineEdit method) static_disconnect() (soma.qt_gui.controller_widget.ControllerWidget static method) stop() (soma.qt_gui.timered_widgets.QLineEditModificationTimer method) (soma.thread_calls.SingleThreadCalls method) stopInternalModification() (soma.qt_gui.timered_widgets.QLineEditModificationTimer method) (soma.qt_gui.timered_widgets.TimeredQLineEdit method) strict_urlparse() (in module soma.path) string_to_list() (in module soma.stringtools)

T

tell() (soma.bufferandfile.BufferAndFile method) ThreadSafeSQLiteConnection (class in soma.sqlite_tools) timeDifferenceToString() (in module soma.somatime) timer (soma.qt_gui.qtThread.QtThreadCall attribute)

TimeredQLineEdit (class in soma.qt_gui.timered_widgets) to_json() (in module soma.serialization) (soma.serialization.JSONSerializable method) tooltip (soma.notification.EditableTree.Item attribute) translate() (in module soma.translation)

U

unamed (soma.notification.EditableTree attribute) unpack() (in module soma.archive) unprotect_parameter() (soma.controller.controller.Controller method) unquote_string() (in module soma.stringtools) unread() (soma.bufferandfile.BufferAndFile method) untar() (in module soma.archive) unzip() (in module soma.archive)

update() (soma.sorted_dictionary.SortedDictionary method) update_controller() (soma.qt_gui.controller_widget.ControllerWidget method) update_controller_widget() (soma.qt_gui.controller_widget.ControllerWidget method) update_controls() (soma.qt_gui.controller_widget.ControllerWidget method) update_hash_from_directory() (in module soma.path) update_query_string() (in module soma.path) user_traits() (soma.controller.controller.Controller method), [1] Uuid (class in soma.uuid)

V

values() (soma.sorted_dictionary.SortedDictionary method) VariableParametersNotifier (class in soma.notification) version_extra (in module soma.info)

version_micro (in module soma.info) version_minor (in module soma.info) visible (soma.notification.EditableTree attribute) (soma.notification.EditableTree.Item attribute)

W

weak_proxy() (in module soma.utils.weak_proxy) worker() (in module soma.mpfork)

writeLock (soma.qt_gui.io.Socket attribute) writeMinf() (in module soma.minf.api)