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Bold_hmc pipeline

Head motion correction of a bold image

Adapted from bold HCM pipeline in mriqc 22.06

Pipeline insight

Bold_hcm pipeline combines the following pipelines and processes:
- Despike
- Deoblique
- Volume Registration
Bold hmc pipeline

Mandatory inputs parameters

  • in_file (a string representing an existing file)

    Functional image (valid extensions: [.nii, .nii.gz]).

    ex. '/home/username/data/raw_data/func.nii'

Optional inputs parameters with a default value

  • despike (a boolean, optional)

    Despike step done if True.

    ex. False (default value)
  • deobliqe (a boolean, optional)

    Deoblique step done if True.

    ex. False (default value)

Outputs parameters:

  • oned_file

    Movement parameters file (extensions: [.txt]).

    ex. '/home/username/data/derived_data/reg_d_func_oned.txt'
  • out_file

    Register file (extensions: [.nii, .nii.gz]).

    ex. '/home/username/data/derived_data/reg_d_func.nii'

Useful links:

mriq HMC pipeline