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ReportGroupMriqc brick

Generate a group report for mriqc pipeline

  • Generate a pdf report for all the subjects for which mriqc run for the chosen modality.

  • Boxplots are generated for each IQMs.
    • The box extends from the first quartile (Q1) to the third quartile (Q3) of the data, with a line at the median.

    • The whiskers extend from the box by 1.5x the inter-quartile range (IQR).

  • A ‘.tsv’ file containing all the IQMs is also generated.


Mandatory inputs parameters:

  • modality (anat or func):

    Choose modality between ‘anat’ and ‘func’.

    ex. 'anat'
    

Outputs parameters:

  • report_pdf (a string that representing a file):

    The generated report (a pdf file).

    ex. '/home/username/data/derived_data/.pdf'
    
  • out_tsv (a string that representing a file):

    A ‘.tsv’ file containing all the IQMs.

    ex. '/home/username/data/derived_data/.tsv'
    

Useful links:

matplotlib boxplot