CarpetParcellation brick¶
Dilate brainmask, substract from itself then generate the union of obtained crown mask and epi parcellation¶
Adapted from mriqc, niworkflow binary dilatation, niworkflow binary Subtraction.
Mandatory inputs parameters:
- brain_mask (a string representing an existing file)
Brain mask (valid extensions: [.nii, .nii.gz]).
ex. '/home/username/data/raw_data/automask_mean_reg_func_valid.nii'
- segmentation (a string representing an existing file)
Template carpet register in subject space (valid extensions: [.nii, .nii.gz]).
ex. '/home/username/data/raw_data/t_tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg.nii.gz'
Optional inputs with default value parameters:
- out_prefix (a string, optional, default value is ‘cseg’)
Specify the string to be prepended to the segmentation filename of the output file.
ex. 'cseg_'
Outputs parameters:
- out_file (a strings representing a file)
Carpet parcelattion file (extensions: [.nii, .nii.gz])
ex. '/home/username/data/derived_data/cseg_t_tpl-MNI152NLin2009cAsym_res-01_desc-carpet_dseg.nii.gz'
Usefull links: