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LabelsCorrespondence brick

Get AssemblyNet labels names or get labels from names

In each segmentation file obtain (tissues, lobes…) with AssemblyNet, each ROI is defined by a label (an integer). This brick is used to obtain the correspondence between the label and the label name, depending on the type of the segmentation file.

Add a list of labels or a list if label names. Choose between “tissues”, “lobes”, “structures”, “macrostructures” and obtain the corresponding labels or label names.


Optional inputs parameters:

  • labels_names (a list of integer or a list of string, optional)

    List of labels or names for which the corresponding name / label is wanted

    ex. [1, 2, 3, 4, 5, 6, 7]
    
    ex2. ['CSF', 'Cortical', 'Cerebrum WM', 'Subcortocal GM', 'Cerebellum GM', 'Cerebellum WM', 'Brainstem']
    
  • lobes (a boolean, optional)

    Get labels for lobes segmentation

    ex. False
    
  • macrostructures (a boolean, optional)

    Get labels for macrostructures segmentation

    ex. False
    
  • structures (a boolean, optional)

    Get labels for structures segmentation

    ex. False
    
  • tissues (a boolean, optional)

    Get labels for tissues segmentation

    ex. True
    

Outputs parameters:

  • correspondence (a list of integer or a list of string)

    List of the corresponding labels

    ex.  ['CSF', 'Cortical', 'Cerebrum WM', 'Subcortocal GM', 'Cerebellum GM', 'Cerebellum WM', 'Brainstem']
    
    ex2. [1, 2, 3, 4, 5, 6, 7]
    

Useful links:

volBrain Assemblynet

brainCOLOR protocol