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GetLabels brick

Get Assemblynet segmentation labels

In each segmentation file obtain (tissues, lobes…) with AssemblyNet, each ROI is defined by a label (an integer). This brick is used to obtain the label and the label name, depending on the type of the segmentation file. Choose between “tissues”, “lobes”, “structures”, “macrostructures” and obtain the corresponding labels and the label names


Optional inputs parameters:

  • lobes (a boolean, optional)

    Get labels for lobes segmentation

    ex. False
    
  • macrostructures (a boolean, optional)

    Get labels for macrostructures segmentation

    ex. False
    
  • structures (a boolean, optional)

    Get labels for structures segmentation

    ex. False
    
  • tissues (a boolean, optional)

    Get labels for tissues segmentation

    ex. True
    

Outputs parameters:

  • labels (a list of integer)

    List of the corresponding labels

    ex. [1, 2, 3, 4, 5, 6, 7]
    
  • names (a list of string)

    List of the corresponding label names.

    ex. ['CSF', 'Cortical', 'Cerebrum WM', 'Subcortocal GM', 'Cerebellum GM', 'Cerebellum WM', 'Brainstem']
    

Useful links:

volBrain Assemblynet

brainCOLOR protocol