GM_WM_Normalize brick¶
Normalises only the grey or/and white matter from a set of images¶
The GM_WM_Normalize brick is equivalent to the Normalize12 brick from the mia_processes library, with an additional filter (in_filter parameter) for grey and/or white matter, applied to the apply_to_files input parameter 1. A list of native space probability maps (apply_to_files parameter) and an inverse deformation field (deformation_file parameter) may have been, for example, obtained after a previous segmentation. The jobtype input parameter is therefore fixed to write.
- The in_filter parameter can take the following values:
GM(grey matter images will be selected before to be normalised).WM(white matter images will be selected before to be normalised).GM & WM(grey and white matter images will be selected before to be normalised).GM + WM(grey and white matter images will be selected and then added together before to be normalised).
For the deformation_file, apply_to_files, write_bounding_box, write_voxel_sizes, write_interp input parameters and normalized_files output parameter, please see the Normalize12 brick of the mia_processes library.
- 1
The selection of the images is made using the syntax of SPM (c1* for grey matter and c2* for white matter).