Home

Documentation

GitHub

TemplateFromTemplateFlow brick

Get template image from TemplateFlow

TemplateFlow is a repository of neuroimaging templates including spatial mapping across standard space. Each template is described by a template name (for example: ‘MNI152NLin2009cAsym’, ‘MNIColin27’, ‘MNIPediatricAsym’) and by several optional entities (resolution, suffix, label..).


Optional inputs with default value parameters:

  • atlas (a string, optional, default value is ‘’)

    Name of a particular atlas (entity ‘atlas’ in template path name). Default is ‘’. Example: ‘DiFuMo’, ‘Scahefer2018’…

    ex. 'DiFuMo'
    
  • desc (a string, optional, default value is ‘’)

    Description field (entity ‘desc’ in template path name). Example: ‘brain’, ‘eye’, ‘256dimensions’ …

    ex. 'brain'
    
  • in_template (a string, default value is ‘MNI152NLin2009cAsym’)

    Template name.

    ex. 'MNI152NLin2009cAsym'
    
  • label (a string, optional, default value is ‘’)

    Label fields. Example: ‘CSF’, ‘GM’…

    ex. 'WM'
    
  • resolution (an int, default value is 2)

    Resolution of the template (entity ‘res’ in template path name).

    ex. 2
    
  • suffix (a string, optional, default value is ‘’)

    Suffix of the template image. Example: ‘T1w’, ‘T2w’, ‘probseg’, ‘T2map’, ‘mask’…

    ex. 'T1W'
    

Outputs parameters:

  • in_template (a strings representing a file)

    Path of the template.

    ex. '/home/username/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_T1w.nii.gz'
    

Useful links:

TemplateFlow