TSNR brick¶
Computes the time-course SNR for a time series¶
Adapted from Nipype Confounds
Mandatory inputs parameters:
- in_file (a string representing an existing file)
Input image (valid extensions: [.nii, .nii.gz])
ex. '/home/username/data/raw_data/func.nii'
Optional inputs with default value parameters:
- prefix_stddev (a string, optional, default value is ‘’)
Prefix of the stddev output.
ex. ''
- prefix_tsnr (a string, optional, default value is ‘’)
Prefix of the TSNR output image.
ex. ''
- suffix_stddev (a string, optional, default value is ‘_stddev’)
Suffix of the STD dev output.
ex. '_stddev'
- suffix_tnsr (a string, optional, default value is ‘_tsnr’)
Suffix of the TSNR output image.
ex. '_tsnr'
Outputs parameters:
- out_tsnr_file (a strings representing a file)
Path of the tsnr image (extensions: [.nii, .nii.gz]).
ex. '/home/username/data/derived_data/func_tsnr.nii'
- out_stddev_file (a strings representing a file)
Path of the STD dev image (extensions: [.nii, .nii.gz]).
ex. '/home/username/data/derived_data/func_stddev.nii'
Usefull links: