Sanitize brick¶
Sanitize input bold image¶
Adapted from niworkflows.
Mandatory inputs parameters:
- in_file (a string representing an existing file)
Input image which intensity will be clipped (valid extensions: [.nii, .nii.gz]).
ex. '/home/username/data/raw_data/func.nii'
Optional inputs with default value parameters:
- max_32bits (a boolean, optional, default value is False)
Cast data to float32 if higher precision is encountered.
ex. False
- n_volumes_to_discard (an int, optional, default value is 0)
Number of non steady-state volumes.
ex. 0
- prefix (a string, optional, default value is ‘’)
Prefix of the output image.
ex. ''
- suffix (a string, optional, default value is ‘_valid’)
Suffix of output image.
ex. '_valid'
Outputs parameters:
- out_file (a strings representing a file)
Path of the sanitize image (extensions: [.nii, .nii.gz]).
ex. '/home/username/data/derived_data/func_valid.nii'
Useful links: