Home

Documentation

GitHub

Resample2 brick

Sets images to the resolution of a reference image using using nilearn.image.resample_to_img()

  • The “PatientName_data/ROI_data/convROI_BOLD2” directory is created to receive the resampling results from the runtime. If this directory exists at runtime, it is deleted.

  • To work correctly, the database entry for the reference_image parameter must have the PatientName tag filled in.


Mandatory inputs parameters:

  • files_to_resample

    The images that will be resampled (a list of pathlike object or string representing a file or a list of items which are a pathlike object or string representing a file ; valid extensions: [.img, .nii, .hdr]).

    ex. ['/home/username/data/raw_data/convACA_L.nii',
         '/home/username/data/raw_data/convACA_R.nii',
         '/home/username/data/raw_data/convACM_L.nii',
         '/home/username/data/raw_data/convACM_R.nii']
    
  • reference_image

    The reference image for resampling (a string representing an existing file ; valid extensions: [.nii, .nii.gz]).

    ex. '/home/username/data/raw_data/template.nii'
    
  • suffix

    Suffix of output images (a string, default value is ‘_2’).

    ex. _2
    

Outputs parameters:

  • out_images

    The resampled images (a list of pathlike object or string representing a file or a list of items which are a pathlike object or string representing a file ; valid extensions: [.nii, .nii.gz]).

    ex. ['/home/username/data/derived_data/patient-name_data/ROI_data/convROI_BOLD2/convACA_L_2.nii',
         '/home/username/data/derived_data/patient-name_data/ROI_data/convROI_BOLD2/convACA_R_2.nii',
         '/home/username/data/derived_data/patient-name_data/ROI_data/convROI_BOLD2/convACM_L_2.nii',
         '/home/username/data/derived_data/patient-name_data/ROI_data/convROI_BOLD2/convACM_R_2.nii']
    

Useful links:

nilearn.image.resample_to_img()