ConformImage brick¶
Conform T1w image¶
remove axes length 1 at end of image shapes if needed (nibabel.squeeze_image)
reordered to be closest to canonical if needed (nibabel.as_closest_canonical)
Be carrefull, if the suffix and prefix input parameters are not defined or consist only of one or more white spaces, the input parameter will be overwritten.
Adapted from mriqc anatomical workflow.
Mandatory inputs parameters:
- in_file (a string representing an existing file)
Input image (valid extensions: [.nii, .nii.gz]).
ex. '/home/username/data/raw_data/T1w.nii'
Optional inputs with default value parameters:
- prefix (a string, optional, default value is ‘’)
Prefix of the output image. Default is ‘’.
ex. ''
- suffix (a string, optional, default value is ‘’)
Suffix of output image. Default is ‘’.
ex. ''
Outputs parameters:
out_file (a strings representing a file) Conforme Image (extensions: [.nii, .nii.gz]).
ex. '/home/username/data/derived_data/T1w.nii'
Usefull links: