TransformFSLConvert brick¶

Perform conversion between FSL’s transformation matrix format to mrtrix3’s¶

(mrtrix transformconvert command)

Mandatory inputs parameters:

in_file (a pathlike object or a string representing an existing file)
FLIRT input image (valid extensions: [.mif, .nii, .nii.gz]).
ex. '/home/username/data/derived_data/DWI.mif'
reference (a pathlike object or a string representing an existing file)
FLIRT reference image (valid extensions: [.mif, .nii, .nii.gz]).
ex. '/home/username/data/derived_data/T1w.mif'
in_transform (a pathlike object or a string representing an existing file)
FLIRT output transformation matrix (valid extensions: [.mif, .nii, .nii.gz]).
ex. '/home/username/data/derived_data/diff2struct_fsl.mat'

Outputs parameters:

out_transform (a pathlike object or string representing a file)
Output CSF response text file
ex. '/home/username/data/derived_data/diff2struct_fsl.txt'

Useful links: