TStatMean brick¶

Mean of bold images (using mean option of the AFNI 3dTstat)¶

Compute mean of input voxels for a 3D+time dataset image.

Mandatory inputs parameters:

in_file (a string representing an existing file)
Input bold file to be averaged (valid extensions: [.nii, .nii.gz]).
ex. '/home/username/data/raw_data/func.nii'

Optional inputs with default value parameters:

output_type (NIFTI or NIFTI_GZ, optional, default value is NIFTI)
Format of the output image (one of NIFTI, NIFTI_GZ).

- NIFTI: *.nii

- NIFTI_GZ: *.nii.gz
ex. NIFTI
out_prefix (a string, optional, default value is ‘mean’)
Prefix of the output image.
ex. 'mean_'

Outputs parameters:

out_file (a strings representing a file)
Out image (extensions: [.nii, .nii.gz]).
ex. '/home/username/data/derived_data/mean_func.nii'

Useful links: